Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g1247 | ATGGATTTTGATCTTTTCCTTTGCATTTCGCTCTCTCTTATCTCTGTCCTTCTTGGCTACACCTTTCTATGGCAACCTCACCGCCGAAACCTGCCACCAACCCCACCTTTTTCTCTTCCATTCATAGGCCATCTCCATCTCCTCAAACATCCCGTCCACCAAACACTTGCCAAACTCTCACAAAATCTCGGCCAACTCTTCTCTCTCCGATTCGGCTCCCGTCTTGTCGTCGTCGTATCTTCTCCTTCTGCCGTCCACGAATGCTTCACAAAGAACGACATCATTCTCGCAAACCGGCCACTCTTGAACACTGGAAAGTACTTAGCACACAACAATTCCACCATGGTGGTCGCTCCCTACGGCGACCATTGGCGAAACCTCCGCCGAATCAGCGCCCTCGAGGTTTTCTCAACCACCCGCCTTAATTCCTTCGTGGGTATTCGTCAAGATGAGGTCAAGCGTTTGCTGTGCAATCTATGTGGTGATGATTCCTTGGAAGAGTTCAGGGTGGTGGAGTTGGAGCCGATGCTGTTGGATCTTACGTTCAATATTGTTATGAGGATGGTGGCTGGAAAGAAGTTTTATGGAGAGGACGTGTTGGATGAGGGATATTCTAAAAGATTTAGAGAGTTGGTGACAGAGATTATGGCACATGGTGGGTCAACGAATCCAGGTGACTTCATACCCTTGTGGAATTGGATTGATCCAACTGGTTTTGAGAAGAGGATCATGAAGCTTGGAAGGAGAGCTGATGAACTCCTTCAAGAATTAGTGGATGAGATTCGAAATAAAAATGATGGAGGAAACACTATGATTGACCATTTACTTCGCTTGCAAAACACAGAACCTCAATATTATAGTGACCAAGTTATCAAAGGTCTCATACAAGATATATTCTTAGCAGGGATTGACTCAACTGCTGTGACCTTAGAATGGGCACTGTCTCATTTACTTAACAACCCGGACGTTTTAAAGAGGGCCACTGCTGAGATAGATTGTTCGGTTGGACAAGAGGATATGGTTAATGAAGTTCATTTGTCGAGTTTAAGCTACTTGCAAGGAATTATATCCGAGACTCTACGGCTAAGTCCGGCTGGTCCTTTGCTTGTACCACACTGTGCATCTGAAGATTGTAAAATACAAGGCTATGATGTTCCACGTGATACAATTGTGTTGATTAATGCTTGGGCTATACATCGAGATCCAAATCTATGGGAAGATGCCACTAGATTTAAGCCTGAAAGACATGTAAATATGATTGGATTTGACTCATACAAACTATTACCATTTGGTTTGGGGAGGAGAGCATGTCCTGGTATGGGAATGGCGCAACGAGTGGTTGGCTTGACTTTGGCATCGCTGATTCAATGCTTTGAATGGAAAAGAATGAGCAACTTATTGGTTGACATGAAGGAAGGTAAAGGGCTCACTATGCCCAAAGCTGAATCATTAGTGGCCAAGTGTAGACCGCGCCCTATAATGAAAGCTATTCTTAGCAAATCAACTGCCCATATTTGA | 1518 | 44.47 | MDFDLFLCISLSLISVLLGYTFLWQPHRRNLPPTPPFSLPFIGHLHLLKHPVHQTLAKLSQNLGQLFSLRFGSRLVVVVSSPSAVHECFTKNDIILANRPLLNTGKYLAHNNSTMVVAPYGDHWRNLRRISALEVFSTTRLNSFVGIRQDEVKRLLCNLCGDDSLEEFRVVELEPMLLDLTFNIVMRMVAGKKFYGEDVLDEGYSKRFRELVTEIMAHGGSTNPGDFIPLWNWIDPTGFEKRIMKLGRRADELLQELVDEIRNKNDGGNTMIDHLLRLQNTEPQYYSDQVIKGLIQDIFLAGIDSTAVTLEWALSHLLNNPDVLKRATAEIDCSVGQEDMVNEVHLSSLSYLQGIISETLRLSPAGPLLVPHCASEDCKIQGYDVPRDTIVLINAWAIHRDPNLWEDATRFKPERHVNMIGFDSYKLLPFGLGRRACPGMGMAQRVVGLTLASLIQCFEWKRMSNLLVDMKEGKGLTMPKAESLVAKCRPRPIMKAILSKSTAHI | 505 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 28876482 | 28878187 | - | Lag0008734.1 | Lac9g1247 | 620173 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g1247 | 505 | Gene3D | Cytochrome P450 | 24 | 494 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | Pfam | Cytochrome P450 | 33 | 480 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 430 | 439 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac9g1247 | 505 | CDD | CYP81 | 64 | 484 | - | - | |
| Lac9g1247 | 505 | PRINTS | E-class P450 group I signature | 290 | 307 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | PRINTS | E-class P450 group I signature | 310 | 336 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | PRINTS | E-class P450 group I signature | 427 | 437 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | PRINTS | E-class P450 group I signature | 84 | 105 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | PRINTS | E-class P450 group I signature | 60 | 79 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | PRINTS | E-class P450 group I signature | 180 | 198 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | PRINTS | E-class P450 group I signature | 437 | 460 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | PRINTS | E-class P450 group I signature | 353 | 371 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | PRINTS | E-class P450 group I signature | 394 | 418 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | SUPERFAMILY | Cytochrome P450 | 32 | 491 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | FunFam | Cytochrome P450 family protein | 24 | 494 | - | - | |
| Lac9g1247 | 505 | PRINTS | P450 superfamily signature | 354 | 365 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | PRINTS | P450 superfamily signature | 428 | 437 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | PRINTS | P450 superfamily signature | 437 | 448 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | PRINTS | P450 superfamily signature | 301 | 318 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g1247 | 505 | PANTHER | CYTOCHROME P450 82C3-RELATED | 18 | 491 | IPR050651 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g2613 | Lac-Chr1:47497584 | Lac9g1247 | Lac-Chr9:28876482 | 7.50E-158 | dispersed | |
| Lac4g2084 | Lac-Chr4:40534507 | Lac9g1247 | Lac-Chr9:28876482 | 1.00E-149 | dispersed | |
| Lac9g1247 | Lac-Chr9:28876482 | Lac12g2490 | Lac-Chr12:41931134 | 1.80E-82 | dispersed | |
| Lac9g1247 | Lac-Chr9:28876482 | Lac9g1255 | Lac-Chr9:29086268 | 7.50E-214 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac9g1247 | K13260 | - | csv:101205626 | 790.801 |