Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1251 ATGCATCCGGATGATCACCACCAGCAGCCGTTGTTGGAGGAGGAAGATGAAGAAACTGCCTATGATTTAACGGAGAAGGTTGTGGTAATTGGGATCGATGAAGAGGAGTCCGATTCCGACGGGGGTTTGCCGCCGTTTTCATGGAGGAAGCTCTGGCTGTTCACGGGGCCTGGGTTCTTGATGAGCATAGCATTTTTAGACCCTGGGAATTTGGAGTCCAATCTTCAGGCAGGTGCTATTGCAGGGTATTCTTTGCTGTGGCTTCTGCTTTGGGCTACGGCTATGGGGCTTTTGATCCAGTTGCTTTCGGCCAGGCTTGGCGTTGCCACTGGCAGGCACTTGGCCGAGCTGTGTAGAGAAGAGTACCCAACTTGGGCGAGGATTGTGCTGTGGGTTATGGCGGAATTGGCACTCATTGGGGCTGATATACAGGAAGTTATAGGGAGTGCTATTGCTATTAAGATTCTGAGTAATGGGGCTTTGCCTCTTTGGGCTGGAGTCATAATCACTGCTTTGGATTGTTTTATCTTCCTGTTTCTTGAGAATTATGGTGTGAGGAAATTGGAGGCTGTTTTTGCTGTTCTTATTGCTACTATGGCACTCTCGTTTGCTTGGATGTTTGGTGAAACTAAGCCAGATGGGAAGGAGCTTCTATTGGGTATTTTGATTCCAAAACTTAGCTCCAAGACAATTAAACAGGCTGTTGCTGTTGTGGGCTGTATCATTATGCCTCATAATGTATTTCTGCACTCTGCTCTTGTACAGTCTCGAGATGTCGATCCGAGCAAGAAAGGGCGGGTCCGAGAAGCTCTTAGATACTACTCTATTGAATCCACTCTTGCCCTTCTTGTCTCCTTCATCATCAACTTGTTTGTTACTACTGTGTTTGCTAAAGCTTTCTATGGCACGGATATAGCAAGTAGCATAGGTCTCGTAAATGCAGGCGAATATCTTCAAGATAAATATGGTGGAGGGCTTTTCCCCATTTTGTACATTTGGGCTATTGGTTTGTTAGCTGCTGGACAAAGTAGCACCATTACTGGTACCTATGCAGGACAGTTTATCATGGGAGGCTTCCTGAACTTGAAGTTGAAAAAATGGCTAAGAGCTTTGATTACTCGAAGCTTTGCAATTGTGCCGACTATGATTGTTGCTCTCTTGTTCGAAACTTCTGACTCGATGGTCGATGTTCTGAATGAATGGCTCAATGTCCTCCAGTCAATTCAGATCCCCTTTGCTCTGATTCCTCTTCTGTGTTTGGCTTCTAAGGAACATCTAATGGGCACTTTCAGAATTGGCCCCGTTTTAAAGATGTTATCTTGGCTGGTGGCAGTCTTGGTGATGGCCATTAACGGGTATCTTTTGGTGAGCTTCTTCTCATCAGAGATGAACGGAGCACTCGTTGCCATTTTTGTGTTCATCTTCATCGCTGCGTATCTTGCCTTTGTTGTTTACCTCGTCTATCGAAGCATTTCCTTCTCAAGTTGGCACAACTTCATAAGACGGAAGACTTACACAGACACCACAAACTGA 1533 45.6 MHPDDHHQQPLLEEEDEETAYDLTEKVVVIGIDEEESDSDGGLPPFSWRKLWLFTGPGFLMSIAFLDPGNLESNLQAGAIAGYSLLWLLLWATAMGLLIQLLSARLGVATGRHLAELCREEYPTWARIVLWVMAELALIGADIQEVIGSAIAIKILSNGALPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPDGKELLLGILIPKLSSKTIKQAVAVVGCIIMPHNVFLHSALVQSRDVDPSKKGRVREALRYYSIESTLALLVSFIINLFVTTVFAKAFYGTDIASSIGLVNAGEYLQDKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWLRALITRSFAIVPTMIVALLFETSDSMVDVLNEWLNVLQSIQIPFALIPLLCLASKEHLMGTFRIGPVLKMLSWLVAVLVMAINGYLLVSFFSSEMNGALVAIFVFIFIAAYLAFVVYLVYRSISFSSWHNFIRRKTYTDTTN 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29001099 29003459 - Lag0008738.1 Lac9g1251 620177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1251 510 PRINTS Natural resistance-associated macrophage protein signature 369 386 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac9g1251 510 PRINTS Natural resistance-associated macrophage protein signature 130 156 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac9g1251 510 PRINTS Natural resistance-associated macrophage protein signature 234 257 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac9g1251 510 PRINTS Natural resistance-associated macrophage protein signature 341 360 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac9g1251 510 PRINTS Natural resistance-associated macrophage protein signature 160 179 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac9g1251 510 PRINTS Natural resistance-associated macrophage protein signature 403 422 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac9g1251 510 PRINTS Natural resistance-associated macrophage protein signature 185 206 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac9g1251 510 Hamap Divalent metal cation transporter MntH [mntH]. 37 459 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac9g1251 510 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 31 493 IPR001046 GO:0005384(PANTHER)|GO:0005774(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0042742(PANTHER)|GO:0046873(InterPro)|GO:0055072(PANTHER)|GO:2000379(PANTHER)
Lac9g1251 510 Pfam Natural resistance-associated macrophage protein-like 72 433 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac9g1251 510 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 427 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Lac9g1251 510 NCBIfam Nramp family divalent metal transporter 56 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1824 Lac-Chr8:36534364 Lac9g1251 Lac-Chr9:29001099 1.80E-88 dispersed
Lac9g1251 Lac-Chr9:29001099 Lac1g0302 Lac-Chr1:6949608 1.10E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1251 K21398 - csv:101211711 949.888