Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1306 ATGAGCTGCCATTGGAACTGCGAGATTCTTGTGTTTCTTCTTCTTCTTCTTCTTCTTCAATGTTGTTGTAATGGCCTGAATTTTGATGGGGTTCTCTTGCTTTCCTTTAAGTATGGCGTTTTGGACGACCCTCTTTTTGTTCTTCAAAACTGGAATTACTCCGATGAGACGCCCTGTTCATGGCGGGGAGTCACCTGCGCCGGTGCCGGTGGCTCTAGAGTTACAGGTTTATCTCTGCCGAACTCTCAGCTTATGGGCTCTGTTTCTCCTGATCTGGGTTTGATCGAAACCCTTCAATCTCTTGATCTTTCGAATAATTCCTTTAATGGGTCTCTTCCCTTCTCTCTCTTCAACGCCACCATGCTCCGGTTTCTTGATTTGTCCGAGAATTTGATCTCCGACGAGGTTCCGGCGGCGGTCAGTCGACTTGGGAATCTGCAAGTTCTTAACCTCTCCGGCAATGCTCTGTCCGGGAACTTTCCGAGGGATCTTGCGAATTTGGGTAATCTCACGGTTGTGTCTCTGAAGAACAATTACATTTCCGGTGAGATTCCCGGTGGGTTCAGAACGGTGCAAGTTTTGGATCTGTCTTCCAATTTGATTAATGGGTCTTTGCCGTCTGATTTCGGTGGCGACAATTTACGTTTCTTCAACATCTCATACAACAGACTTTCCGGCCTAATCCCGCCGGATTTCGCCGACAAAATTCCGGCCAACGCCACGATTGATCTCTCCTTCAACAACCTCACCGGCGAAGTCCCTGTTTCCAACGTGTTCATGAACCAAGAAGCAAATTCCTTCACCGGGAACCACCAACTCTGCGGCGAGTTAACGAAAACCCCATGCCCAATTCCTTCATCGCCGGCGTCTCTCCCGCCGGCGATCGCCGCCATTCCAATAGACCCAAGTACTCCAGAAACCACCTCGCCGGAAAAACAGAGCGAAACAGGGTTCAAGCCCTCAACAATCGTCGCCATTGTACTCGGCGACACCGTCGGACTAGCAATTCTGTGCCTCCTCTTCTTCTACGTCTACCACTTGAAGAAAAAAAACAAAACCGTCGAAACCCATTTGAAAAACGAAGCCAATTTAGCCAAAGACAGCTGGTCCACATCCTCATCAGAATCCAGAGGATTTTCGCGATGGTCCTGCCTGAGAAAAACAGAGGACCCGGAAGAAGGAAATTCCGAGCAGGCGAGCGTCGGGTCCGTCTCCGGGCACCGCGAGACGGCGGAGGAGGGGAACAAGAGAGGAACTTTGGTGACGGTGGACGGCGGAGAGAAGGAGCTGGAACTGGAGACGCTGTTGAAGGCGTCGGCGTACATTCTGGGCGCCACCGGATCGAGCATAACGTACAAGGCGGTGCTGGAAGACGGGACGGCGTTCGCCGTGAGGAGAATCGGAGACGGCGGAGTGGAGAAGTACAAGGATTTCGAGAACCAGATTCGAGTGGTGGCTAAATTAGTTCACCCAAATTTGGTTCGTATTCGTGGGTTTTATTGGGGCGTGGACGAGAAGCTCGTTATCTATGATTTTGTTCCTAATGGTAGCCTCGCCAATGCTCGTTACAGGAAAGTGGGCTCTTCGCCTTGTCATCTTCCATGGGAGGCCCGATTGAGAATAGCAAAAGGACTGGCCCGTGGCCTCTCTTATCTTCACGACAAGAAGCATGTCCATGCCAACTTGCGCCCCAGCAACATTCTTCTGGGCTACGACATGGAGCCCAAGATAGGCGATTTCGGCCTCGAGAAGCTCACCTTCGGCGACTCGAGCTACAAAGCCGGTGGCTCCACTCGCAACTTCGGTAGCAAGAGATCCACAGCGTCCCGAGATAGCTTCCAGGATTTCGTCGCTGGACCGAGCCCTGGACCGAGTCCGAGCTCGATCAGTGGGGTGTCGCCGTATCTAGCACCGGAATCGCTTCGGAGCTTGAAGCCAAACCCGAAATGGGACGTGTACTCGTTTGGGGTGATATTGTTGGAGCTACTGACGGGAAAGATCATAGTGTTGGACGAGTTGGGTCAAGGGCTTGGACTTGCGGTCGAAGATAAGAGTCGAGCCATAAGGATGGCTGACATGGCGATTCGAGCTGACGTGGAGGGGAGAGAAGAAGCGTTGTTGTCTTTGTTTAAATTAGGGTATAGTTGTGCATCTCCTACACCACAAAAGAGACCATCCATGAAAGAAGCCTTGCAAGTTTTGGAGAAATTTCCAACCATATCGACTTCATCACACTATTATGGTCTCTAG 2250 51.24 MSCHWNCEILVFLLLLLLLQCCCNGLNFDGVLLLSFKYGVLDDPLFVLQNWNYSDETPCSWRGVTCAGAGGSRVTGLSLPNSQLMGSVSPDLGLIETLQSLDLSNNSFNGSLPFSLFNATMLRFLDLSENLISDEVPAAVSRLGNLQVLNLSGNALSGNFPRDLANLGNLTVVSLKNNYISGEIPGGFRTVQVLDLSSNLINGSLPSDFGGDNLRFFNISYNRLSGLIPPDFADKIPANATIDLSFNNLTGEVPVSNVFMNQEANSFTGNHQLCGELTKTPCPIPSSPASLPPAIAAIPIDPSTPETTSPEKQSETGFKPSTIVAIVLGDTVGLAILCLLFFYVYHLKKKNKTVETHLKNEANLAKDSWSTSSSESRGFSRWSCLRKTEDPEEGNSEQASVGSVSGHRETAEEGNKRGTLVTVDGGEKELELETLLKASAYILGATGSSITYKAVLEDGTAFAVRRIGDGGVEKYKDFENQIRVVAKLVHPNLVRIRGFYWGVDEKLVIYDFVPNGSLANARYRKVGSSPCHLPWEARLRIAKGLARGLSYLHDKKHVHANLRPSNILLGYDMEPKIGDFGLEKLTFGDSSYKAGGSTRNFGSKRSTASRDSFQDFVAGPSPGPSPSSISGVSPYLAPESLRSLKPNPKWDVYSFGVILLELLTGKIIVLDELGQGLGLAVEDKSRAIRMADMAIRADVEGREEALLSLFKLGYSCASPTPQKRPSMKEALQVLEKFPTISTSSHYYGL 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30224507 30227179 + Lag0008793.1 Lac9g1306 620232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1306 749 CDD STKc_IRAK 443 737 - -
Lac9g1306 749 PRINTS Leucine-rich repeat signature 143 156 - -
Lac9g1306 749 PRINTS Leucine-rich repeat signature 98 111 - -
Lac9g1306 749 FunFam Leucine-rich repeat receptor-like protein kinase 190 284 - -
Lac9g1306 749 SUPERFAMILY L domain-like 31 275 - -
Lac9g1306 749 Gene3D Ribonuclease Inhibitor 27 189 IPR032675 -
Lac9g1306 749 Gene3D Ribonuclease Inhibitor 190 284 IPR032675 -
Lac9g1306 749 SUPERFAMILY Protein kinase-like (PK-like) 442 735 IPR011009 -
Lac9g1306 749 MobiDBLite consensus disorder prediction 387 418 - -
Lac9g1306 749 Gene3D Transferase(Phosphotransferase) domain 1 513 745 - -
Lac9g1306 749 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Lac9g1306 749 Pfam Protein kinase domain 443 732 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g1306 749 FunFam Leucine-rich repeat receptor-like protein kinase 26 186 - -
Lac9g1306 749 Gene3D Phosphorylase Kinase; domain 1 405 512 - -
Lac9g1306 749 MobiDBLite consensus disorder prediction 295 316 - -
Lac9g1306 749 MobiDBLite consensus disorder prediction 302 316 - -
Lac9g1306 749 Pfam Leucine Rich Repeat 98 118 IPR001611 GO:0005515(InterPro)
Lac9g1306 749 Pfam Leucine Rich Repeat 169 189 IPR001611 GO:0005515(InterPro)
Lac9g1306 749 Pfam Leucine Rich Repeat 191 210 IPR001611 GO:0005515(InterPro)
Lac9g1306 749 Pfam Leucine Rich Repeat 145 167 IPR001611 GO:0005515(InterPro)
Lac9g1306 749 Pfam Leucine Rich Repeat 213 233 IPR001611 GO:0005515(InterPro)
Lac9g1306 749 MobiDBLite consensus disorder prediction 613 632 - -
Lac9g1306 749 ProSiteProfiles Protein kinase domain profile. 437 740 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g1306 749 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 189 736 IPR050647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0530 Lac-Chr13:3875933 Lac9g1306 Lac-Chr9:30224507 3.20E-77 dispersed
Lac8g3004 Lac-Chr8:46880294 Lac9g1306 Lac-Chr9:30224507 7.70E-62 dispersed
Lac9g1306 Lac-Chr9:30224507 Lac9g2320 Lac-Chr9:42535624 6.90E-38 dispersed
Lac5g2569 Lac-Chr5:44238429 Lac9g1306 Lac-Chr9:30224507 5.30E-150 transposed
Lac12g1500 Lac-Chr12:27649048 Lac9g1306 Lac-Chr9:30224507 9.60E-32 wgd
Lac13g1546 Lac-Chr13:16031946 Lac9g1306 Lac-Chr9:30224507 5.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86425 PF00069 Pkinase 1.10E-29 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1306 - - - 0.0