Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1320 ATGGCGGTGGAGCTCCTCACAGCCTTCTCCAACGCCCAGCTCTCCGCCCCAATGGACCAAGACTCCGCCGTCCAAGAAGCCGCCTCCGGCCTCGACACCCTCAAAAAGCTCGTCTCATTACTCTCCCACTCTCCCCCTTCCAATCTCGACTCCGATTGCCAAGCCGTCGCCAACGCCGCCGTCTCCCACTTCAAGAAGGCCATTTCTCTCCTCGGTCGCTCCCCCCGTACCGGCCACGCCCGATTCCGCCGTGCCCCTTTGGATTCCTCTAAAGTTTACAACGCCACTCCCATTCAGCAAATTCCTCCTCCTCTTGACCGCCGCGAATCGCCCACCACCATCAATTTCTCTTACTCCTCTGCCCCTAGTGGCTCCTTCCTCACCTCTCTTGCCGGTGCCGACTCTGAAATTAAGGTCCACCACCAACACCAACACCAACCCTCTTCCTCTTCTTTTCAGATCACCGATCTTTCCAGAGTTTCTTCTGTTGTCTCTAAGCCTTCTTCTGGTCTCAAGAGGAAGTGCGGCTCCGAGAATTTGGGCTCTGGGAAGTGCAGTGGATCCTCCGGCGGTCGATGCCACTGCTCTAAGAAGAGAAAAATGAGGTTGAAAAGGGTGGTGAGAGTTCCAGCCATAAGCTCGAAGAACGCGGATATTCCTCCTGATGATTATTCATGGAGGAAGTATGGACAGAAGCCAATAAAGGGTTCTCCATATCCAAGAGGTTACTATAAGTGCAGCAGCTTAAGAGGATGTCCAGCTAGAAAGCACGTCGAGAGAGCCTCGGATGATCCATCTATGTTAATAGTGACTTATGAAGGCGACCATAATCACTCTCAATCAGTTGCAGAAGCCTCAAGTCTCATCCTTGAATCTTGGTGA 882 52.95 MAVELLTAFSNAQLSAPMDQDSAVQEAASGLDTLKKLVSLLSHSPPSNLDSDCQAVANAAVSHFKKAISLLGRSPRTGHARFRRAPLDSSKVYNATPIQQIPPPLDRRESPTTINFSYSSAPSGSFLTSLAGADSEIKVHHQHQHQPSSSSFQITDLSRVSSVVSKPSSGLKRKCGSENLGSGKCSGSSGGRCHCSKKRKMRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30464887 30466285 + Lag0008807.1 Lac9g1320 620246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1320 293 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 24 283 IPR044810 GO:0003700(InterPro)
Lac9g1320 293 SMART WRKY_cls 220 280 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g1320 293 SUPERFAMILY WRKY DNA-binding domain 216 280 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g1320 293 ProSiteProfiles WRKY domain profile. 215 281 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g1320 293 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g1320 293 Gene3D WRKY domain 204 281 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g1320 293 FunFam WRKY transcription factor 65 204 281 - -
Lac9g1320 293 Pfam Plant zinc cluster domain 172 218 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0348 Lac-Chr2:2618629 Lac9g1320 Lac-Chr9:30464887 2.10E-67 dispersed
Lac3g0363 Lac-Chr3:2742618 Lac9g1320 Lac-Chr9:30464887 1.40E-47 dispersed
Lac4g2208 Lac-Chr4:41754574 Lac9g1320 Lac-Chr9:30464887 8.70E-44 dispersed
Lac5g2175 Lac-Chr5:40326805 Lac9g1320 Lac-Chr9:30464887 8.00E-21 dispersed
Lac6g0595 Lac-Chr6:4971891 Lac9g1320 Lac-Chr9:30464887 9.50E-18 dispersed
Lac7g0201 Lac-Chr7:1573823 Lac9g1320 Lac-Chr9:30464887 1.10E-24 dispersed
Lac9g1320 Lac-Chr9:30464887 Lac9g2256 Lac-Chr9:41926862 4.90E-16 dispersed
Lac9g1320 Lac-Chr9:30464887 Lac1g2593 Lac-Chr1:47293777 1.10E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24415 PF03106 WRKY 2.60E-26 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1320 - - - 0.0