Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1420 ATGATTTCTGTTGCCCCACCGTGCGACGGTCGGCAGCCCGAACTCTCCCCCAAAATCTCCTCTCAACCGCCGCCGACGACCCATGTTTTCCGATCGAAGTTACCGGATATTGCAATCCCCAATCATCTCCCTCTTCACAGCTACTGTTTTCAGAAGCTCTCTGAATTCTCCGACCGCCCTTGTTTGATCGTCGGCTCCACCGGAAAATCCTATTCCTTCTCCGAAACCCATCTGTTCTCGCGGAAGGCCGCCGCCACTTTCTCTAAACTCGGAATTAAGAAGGGCGATGTCATTATGATTCTCCTCCAGAACTCTGCGGAATTCGTTTTCTCTTTCATGGGTTCCTCCATGATCGGCACCGTCGCCACCACCGCAAATCCGTATTACACGGCGGCGGAGATTTCCAAGCAGCTGAAGTCCTCCGGTGCCAAATTGGTCGTCACTTACTCGCATTGCGTCGACAAGCTCCGAGAATCCGGCGAGGATCTCACCATCGTCACTGTCGATGACCCACCGGAGAACTGTCTAAGCTTTTCGATGGTTTATGATGCCGACGAAAATGACGTGCCTACGGTGGAGATCGACCAAAACGACGCCGTTTCGCTGCCGTTCTCCTCTGGCACGACCGGGCTTCCCAAGGGAGTGATTTTGACCCATAGGAGTATGGTATCGAGTGTGGCTCAACAGGTAGATGGAGAGAATCCGAACGTGTATTTGAGAAAGAATGACGTAGTTTTATGCGTGCTACCGATGTTCCACATATTCGCCTTGAGCAGCATTGTTTTGATTTCGATTAGGTCAGGGGCGACTCTACTATTAATGGAGAAGTTCGAAATAGATACATTGTTACGGCTGATAGAGAGGCATCGGGTGACGGTGGCGACGGTGGTGCCACCGTTGGTGGTGGCGCTGGTGAAGAACCCCAAGGTAGCGGATTGTGACTTGAGCTCGATCAGAATGGTGTTTTCCGGGGCGGCGCCACTCCGGAAGGAGTTGGAGGAGGCCCTCATGCAGAGGATACCTCAAGCAATTTTTGGTCAGGGATATGGGATGACTGAAGCGGGACCCGTGCTAAGCATGTGCTCGGCTTTTGCAAAGGAGCCACCAATGCCAACAAAGTCAGGATCCTGCGGTAGAGTGGTTAGAAACTCTGAGCTCAAAATCATTGACCCACAAACTGGCGCATCCCTTAGCTATAATCAACCTGGAGAGATTTGGGTTCGTGGTCCACAAATTATGAAAGGATATTTGAACGACCCGGTGGCCACGTCACTGACCGTCGACGCGGAGGGTTGGCTTCATACGGGTGACATTGGCTACATTGACGATGAAGAAGAAATTTTTATTGTTGACAGAGTCAAAGAGATCATTAAATTTAAAGGATTTCAGGTGGCACCAGCGGAGTTGGAGGCCCTTCTCGTAAACCATCCCTCTATTGTAGATGCAGCTGTGGTCCCGCAAAATGATGACGTTGCTGGTGAAGTTCCAGTGGCTTTCGTGGTTCGATCAACAGATAATGAACTGACCGAGGAGGCAGTAAAAGAATTCATAGCAAAACAGGTTGTGTTCTACAAGAAATTGCAGAAAGTTTACTTTGTGCAAACAATTCCAAAATCACCCTCAGGAAAGATCTTGAGAAAGGAACTCAAAGCCAGGCTCTCGGTCTCACATGCTGCCTTCTAA 1683 50.15 MISVAPPCDGRQPELSPKISSQPPPTTHVFRSKLPDIAIPNHLPLHSYCFQKLSEFSDRPCLIVGSTGKSYSFSETHLFSRKAAATFSKLGIKKGDVIMILLQNSAEFVFSFMGSSMIGTVATTANPYYTAAEISKQLKSSGAKLVVTYSHCVDKLRESGEDLTIVTVDDPPENCLSFSMVYDADENDVPTVEIDQNDAVSLPFSSGTTGLPKGVILTHRSMVSSVAQQVDGENPNVYLRKNDVVLCVLPMFHIFALSSIVLISIRSGATLLLMEKFEIDTLLRLIERHRVTVATVVPPLVVALVKNPKVADCDLSSIRMVFSGAAPLRKELEEALMQRIPQAIFGQGYGMTEAGPVLSMCSAFAKEPPMPTKSGSCGRVVRNSELKIIDPQTGASLSYNQPGEIWVRGPQIMKGYLNDPVATSLTVDAEGWLHTGDIGYIDDEEEIFIVDRVKEIIKFKGFQVAPAELEALLVNHPSIVDAAVVPQNDDVAGEVPVAFVVRSTDNELTEEAVKEFIAKQVVFYKKLQKVYFVQTIPKSPSGKILRKELKARLSVSHAAF 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 32082077 32087853 - Lag0008907.1 Lac9g1420 620346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1420 560 MobiDBLite consensus disorder prediction 1 26 - -
Lac9g1420 560 Pfam AMP-binding enzyme 53 417 IPR000873 -
Lac9g1420 560 FunFam Long-chain-fatty-acid--CoA ligase FadD 31 454 - -
Lac9g1420 560 Gene3D - 454 556 IPR045851 -
Lac9g1420 560 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 550 - GO:0016207(PANTHER)|GO:0016405(PANTHER)
Lac9g1420 560 CDD 4CL 39 549 - -
Lac9g1420 560 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Lac9g1420 560 SUPERFAMILY Acetyl-CoA synthetase-like 37 553 - -
Lac9g1420 560 FunFam 4-coumarate--CoA ligase 2 455 556 - -
Lac9g1420 560 Pfam AMP-binding enzyme C-terminal domain 468 543 IPR025110 -
Lac9g1420 560 Gene3D - 23 453 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2710 Lac-Chr4:46053276 Lac9g1420 Lac-Chr9:32082077 1.20E-180 dispersed
Lac4g2711 Lac-Chr4:46070636 Lac9g1420 Lac-Chr9:32082077 1.10E-178 dispersed
Lac6g2399 Lac-Chr6:41669985 Lac9g1420 Lac-Chr9:32082077 3.40E-47 dispersed
Lac6g2400 Lac-Chr6:41674924 Lac9g1420 Lac-Chr9:32082077 1.60E-127 dispersed
Lac7g2419 Lac-Chr7:41297922 Lac9g1420 Lac-Chr9:32082077 3.20E-109 dispersed
Lac8g2046 Lac-Chr8:38961727 Lac9g1420 Lac-Chr9:32082077 6.20E-14 dispersed
Lac9g1420 Lac-Chr9:32082077 Lac11g0573 Lac-Chr11:5816331 5.60E-186 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1420 K01904 - csv:101221344 925.62