Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1517 ATGGCTACTTTCTTCTACGTCGTTCCAATGCTACTAAGTCATCTCCTTCTCTTTCTCCTTCTCCTTCTCCATCTTCCTCTCTCTGTCGTCTCAGTTTCTTTCAAAATCAACGCATTCAATTCCATTGATAACCAAATACTTTACCAGGGAGACGCAGTTCTTTCCGGTGGAAATATCTTACTCAGCGGCCCTAATTCTTATTCTCACGTCGGCCGAGCCATTTACAAAGATTCTGTGCCGATTTGGGACTCCGAAACAGGAAAAGTCACCGATTTCTCGACCCATTTCACCTTCACGATCGATACTCAAAATAAAACGAAATACGGCAGTGGGATTGCTTTTTTCTTAGCTCCAGCTGGGTCTCAAATCCTCACAAATTCGGCCGGTGGGTACCTTGGCCTTTACAACAAGACGGTCAGGAACACACCCAGAAACCAAATCGTTCATGTCGAGTTTGATTCTGGCGTAAATGATAACTGGGATCCTCCATTTGAACATGTGGGCATAAACGTCAACTCCATTTCTTCTTCTAATTACACTGCTTGGAATGCCACCTTACACAGTCGTGATGTTGCCGATGTGTGGATTTCCTACAATTCAACCGCCAAGCACTTGAGTGTCTCGTGGAAATACCGAAACACGTCGAACTCGTTTCTAAATACCAGCCTGAGTTTCCAGATTGATCTAAAGGCGATTCTTCCTCAGTGGGTGGATGTTGGATTTTCAGGCGCAACGGGTGCACATTTAGAGAGACATACGCTATCTTCATGGGAATTCAACTCTAGTTTGGATATGAAGCAAACGAGTCCAAATAATGATAATGGGAACAAAGTTGATGTAGTTGTAGGCGTAGCGGTTTCAGTTGGAGTTTTGATTATCGTGGCAATGGTAGTATTTGTAGTGCTTTGGAGGTTGAGGCAAGGGAAAAGGAAATTAGCAGAAGAAGGGAATCTTGAGGAGGTGAATTTGACCTTCATTAACGATGATTTGGAAAGAGGGGTTGGACCGAGAAGGTTTTCTCACAAGCTTCTTGCCATGGCCACCAACAATTTCTCAAACGAAAGGAAGTTGGGCGAAGGAGGATTCGGTGCAGTTTATAGAGGGTACATACCAAACATAGATTTGAGTGTAGCTGTGAAGAAAATCTCGAGGGGTTCTAAACAGGGAAGAAAAGAGTACATAACTGAAGTGAAGATCATTAGTAGGCTTCGCCATCGAAATTTGGTGCAACTCATAGGTTGGTGCCATGATAAAGGTGAGTTCTTGCTCGTTTATGAATTCATGTCCAATGGTAGCCTTGATTCTCATCTCTTTGGTAGGAGAAGCCCTCTTTCTTGGGCTGTGAGATATAAGATTGCTTTAGGTTTAGCATCTGCGTTGTTATATCTTCATGAAGAATGGGAACAGTGCGTGGTTCATAGAGATATTAAATCCAGCAATGTCATGTTAGACTCAAACTTCAATGTGAAGCTTGGAGATTTTGGGCTGGCTCGATTGATGGACCATGAGTTGGGTCCTCAAACAACTGGGTTGGTGGGAACTTTGGGCTACTTAGCACCAGAATATATAAGTACAGGTAGAGCCAGTAAAGAATCTGATGTGTTTAGCTTTGGAGTGGTTGCTTTGGAGATTGCCACTGGAAGAATGTCGAGAACCTCCATGGAAAAGGAATCTCATAAGGGTTTAGTGGAGTGGGTTTGGGATCTTTATGGGAGTGGAGAGTTGTTTGTTGGCGTAGATGAAAAATTGCAGTCTGATTATGATAAAAAACAGGTTGAGTGTTTGATGCTTGTAGGATTGTGGAGTGCTTATCCAGACCCTAATCTCAGACCTTCGATAAAACAAGCAATCCAAGTTCTTAATTTTGAGACAGCGATGCCAAATCTTCCAAGTCAAATGCCTGTTCCTATGTATCATACTCCTTCCACATTGATGAGCTCAAATGAACCTTCATTTACCGTAAGTCTTGACATGGGTCGTTGA 1983 42.91 MATFFYVVPMLLSHLLLFLLLLLHLPLSVVSVSFKINAFNSIDNQILYQGDAVLSGGNILLSGPNSYSHVGRAIYKDSVPIWDSETGKVTDFSTHFTFTIDTQNKTKYGSGIAFFLAPAGSQILTNSAGGYLGLYNKTVRNTPRNQIVHVEFDSGVNDNWDPPFEHVGINVNSISSSNYTAWNATLHSRDVADVWISYNSTAKHLSVSWKYRNTSNSFLNTSLSFQIDLKAILPQWVDVGFSGATGAHLERHTLSSWEFNSSLDMKQTSPNNDNGNKVDVVVGVAVSVGVLIIVAMVVFVVLWRLRQGKRKLAEEGNLEEVNLTFINDDLERGVGPRRFSHKLLAMATNNFSNERKLGEGGFGAVYRGYIPNIDLSVAVKKISRGSKQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMSNGSLDSHLFGRRSPLSWAVRYKIALGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNVKLGDFGLARLMDHELGPQTTGLVGTLGYLAPEYISTGRASKESDVFSFGVVALEIATGRMSRTSMEKESHKGLVEWVWDLYGSGELFVGVDEKLQSDYDKKQVECLMLVGLWSAYPDPNLRPSIKQAIQVLNFETAMPNLPSQMPVPMYHTPSTLMSSNEPSFTVSLDMGR 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33816398 33818380 + Lag0009004.1 Lac9g1517 620443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1517 660 Gene3D - 30 286 - -
Lac9g1517 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g1517 660 Gene3D Transferase(Phosphotransferase) domain 1 428 642 - -
Lac9g1517 660 Gene3D Phosphorylase Kinase; domain 1 336 427 - -
Lac9g1517 660 CDD lectin_legume_LecRK_Arcelin_ConA 32 263 IPR001220 GO:0030246(InterPro)
Lac9g1517 660 ProSitePatterns Protein kinases ATP-binding region signature. 357 381 IPR017441 GO:0005524(InterPro)
Lac9g1517 660 FunFam L-type lectin-domain containing receptor kinase IX.1 336 427 - -
Lac9g1517 660 ProSiteProfiles Protein kinase domain profile. 351 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g1517 660 FunFam Lectin-domain containing receptor kinase A4.3 428 640 - -
Lac9g1517 660 Pfam Legume lectin domain 32 271 IPR001220 GO:0030246(InterPro)
Lac9g1517 660 FunFam L-type lectin-domain containing receptor kinase IX.1 30 272 - -
Lac9g1517 660 PANTHER - 49 630 IPR050528 GO:0005886(PANTHER)
Lac9g1517 660 ProSitePatterns Legume lectins alpha-chain signature. 233 242 IPR000985 -
Lac9g1517 660 SUPERFAMILY Protein kinase-like (PK-like) 335 645 IPR011009 -
Lac9g1517 660 Pfam Protein kinase domain 352 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g1517 660 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 265 IPR013320 -
Lac9g1517 660 SMART serkin_6 351 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g1517 660 CDD STKc_IRAK 357 621 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1415 Lac-Chr8:30899266 Lac9g1517 Lac-Chr9:33816398 4.20E-103 dispersed
Lac9g1517 Lac-Chr9:33816398 Lac9g1531 Lac-Chr9:34041418 4.30E-294 dispersed
Lac9g1515 Lac-Chr9:33777166 Lac9g1517 Lac-Chr9:33816398 1.50E-68 proximal
Lac2g2648 Lac-Chr2:40772503 Lac9g1517 Lac-Chr9:33816398 6.60E-61 wgd
Lac9g0548 Lac-Chr9:10295928 Lac9g1517 Lac-Chr9:33816398 4.20E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86429 PF00069 Pkinase 7.80E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1517 - - - 0.0