Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1614 ATGCCGCGCCCTTATTTCCACAAGCTTGTTCTCTCCTCCACTATTCAAGCTAGGAAATTGAGAATCCCTGAGACTTTTGTCAGGATGATCAGGGATGAGCTTTCTGCAGTTGCAACACTTACTGTTCCTGACGGTCATGTTTGGCGTGTGGGGTTGAGGAAAACTGATAATAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTCGAGCATTATGCCATACGGGTTGGATTTTTATTAGTATTCAGATATGAGGGAAACTCAGCATTCTGTGTTTTTATCTTTAATCTTAATACATCTGAAATAAACTACCAATCTGCTGCTCTCGGTAGTAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGACATTCCTGAAGCTATTCCTTCCAATCAGTCCATGAATTCTGGTTCTTTACGAAACAAGCTATTTGGAGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTGCAAGCCGAATACTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTAGAGGTTAAAAAATCTGCAGATGAGGTGAGATTTCAGAATTTGGGTGATGATGGACACAGACCTAAAAAAAGTGGAGGCAAAAAGAGGAAAATTGATTCTAGCGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGACATTCGCTTTAGATTTTATGAAAGTGCTTCTGCTAGGAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACGCTGCAAAGGCTTTCGAGCCTGCTAATCCTTTCTGCAGGGTTGTCTTGCGACCATCTTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGAGTTTCAGGATTCATCAAACTTCAGACACCTGATGGTAGACAGTGGCCGGTCCGATGTCTTTATAAAGTTGGTAGAGCCAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGATGTTTGTGTGTTTGAGCTTCTCAGGATGAGAGAAATTGTGCTCAAAGTTACCATGTTTCGTGTCATTGAAGATGCTGGACGAATGGTAAACCCGAATCCTCCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCAAATTAAGCTGATCAGAAATTAA 1191 40.81 MPRPYFHKLVLSSTIQARKLRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKTDNKFWFEDGWHGFLEHYAIRVGFLLVFRYEGNSAFCVFIFNLNTSEINYQSAALGSNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDGHRPKKSGGKKRKIDSSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPANPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEDAGRMVNPNPPSMMNPPPLRSVSQIKLIRN 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35401561 35404620 + Lag0009101.1 Lac9g1614 620540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1614 396 Gene3D - 1 99 IPR015300 -
Lac9g1614 396 SUPERFAMILY DNA-binding pseudobarrel domain 3 98 IPR015300 -
Lac9g1614 396 CDD B3_DNA 268 363 IPR003340 GO:0003677(InterPro)
Lac9g1614 396 Gene3D - 247 367 IPR015300 -
Lac9g1614 396 MobiDBLite consensus disorder prediction 195 228 - -
Lac9g1614 396 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677(InterPro)
Lac9g1614 396 SUPERFAMILY DNA-binding pseudobarrel domain 265 366 IPR015300 -
Lac9g1614 396 CDD B3_DNA 4 96 IPR003340 GO:0003677(InterPro)
Lac9g1614 396 SMART B3_2 6 98 IPR003340 GO:0003677(InterPro)
Lac9g1614 396 SMART B3_2 270 365 IPR003340 GO:0003677(InterPro)
Lac9g1614 396 PANTHER B3 DOMAIN-CONTAINING 3 350 IPR050655 -
Lac9g1614 396 ProSiteProfiles B3 DNA-binding domain profile. 270 365 IPR003340 GO:0003677(InterPro)
Lac9g1614 396 Pfam B3 DNA binding domain 7 96 IPR003340 GO:0003677(InterPro)
Lac9g1614 396 Pfam B3 DNA binding domain 272 363 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2734 Lac-Chr5:45783864 Lac9g1614 Lac-Chr9:35401561 1.90E-35 dispersed
Lac9g1614 Lac-Chr9:35401561 Lac9g1615 Lac-Chr9:35411358 2.00E-57 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24423 PF02362 B3 5.30E-18 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1614 - - - 0.0