Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1630 ATGCCGACCTCCCCTTCCCCTTCCCCTTCCCCTTCCCCATCCACCTCCTCCTCCTCCGCCGCCGTCGCCAATTTCCCTCCGCCATCCTCCTTACAGCCGGCAAAGCTCCCCGTCGACTTCAGCCCTCCTCTAATCGCCATGGTCGTCGTCATCGCTACTGCCTTTCTCATTGTAACTTACTCTCGCCTCATCTCCCGCCACCTCATCCCTCCGATCCTCCACCTTCTCCGCCGCCACCGCCGTCGATGGCGGCGGTGGCGGCGACGGCGACTTCGTGCTCGATCTTACCTTCCGTCGTCATCCGGCGGCGACCTGGATTCTCTCCCTTACGATTCGCCTTTCTTCGAGCCTACCGATGGCTTCCACGTGTTCTCTCCGTACGGCCTCGACGAATCCGTCATCAAGACGATTCCGCTCTCTGTCTACACTGCCAAGAGTCGCGACCGTGAGTGCGCCGTTTGTCTTCTCGAGTTCGAAGACGATGATTACGTCCGTACGCTTCCGATTTGTTCTCACGCGTTTCACGTTGATTGTATAGATGTATGGCTTAGGTCACATGCGAACTGTCCGCTCTGTCGCGCGGTGGTTTTCCGACCGGAGTCTCCCTTCACGCCGGTCATGGCGGCCAGAATCCGGCCGAGCCTCGACGATACGATCTTACGGAGCATCGTATTGGAGCCGCTCGCCGAAGGTACTATACCTAATCGAAATTCTTATCACGCAACGGAATCGGAGATTACGCCGTGCGTCGACGAACCGAGGAACAGCAATTCGGCGGAGGATCAAATCAACGGCAGAGACTTCTTGTTGAAGCGATCGTATTCATTCGGATTCGAACGGAGCCTAGCGTCGGAGAGGATGATTCTGGAACCGGCAACGGCGTCGCCATGGAGGTACCGCCGCGGAAGCTTCTGGAGCAAACGGCCATCGCCATTCGGATCTCTACCAAAGGCGAGAGTGTTCTCGTTCCGATACTACAGAGGAATGAAGTCACCGTTCTTCAGACGGAGAGGAGGATTCTTTCCACTATCAGAATCAAGCTGGAGATTCTCCAACGGCGTAGGCGGAGGTTCGTCGAGACGGAGCAAGTCAATGACGAGTCCGATGTTTCTCCGCTCATCGGTAACCGGCGGAGGCGCGGCGGCGTTCTCGTCGAGCCGGTTGCGGTGCGGAGATCCCGAAGCGTTACTGTCACCGGAGAGATTCAACCGAAGATGA 1218 57.55 MPTSPSPSPSPSPSTSSSSAAVANFPPPSSLQPAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLIPPILHLLRRHRRRWRRWRRRRLRARSYLPSSSGGDLDSLPYDSPFFEPTDGFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLAEGTIPNRNSYHATESEITPCVDEPRNSNSAEDQINGRDFLLKRSYSFGFERSLASERMILEPATASPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTGGGAAAFSSSRLRCGDPEALLSPERFNRR 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35612562 35613779 - Lag0009117.1 Lac9g1630 620556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1630 405 SMART ring_2 151 192 IPR001841 -
Lac9g1630 405 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Lac9g1630 405 SUPERFAMILY RING/U-box 147 199 - -
Lac9g1630 405 FunFam RING-H2 finger protein ATL65 122 197 - -
Lac9g1630 405 Pfam Ring finger domain 150 193 IPR001841 -
Lac9g1630 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 197 IPR013083 -
Lac9g1630 405 PANTHER RING-H2 FINGER PROTEIN ATL16 14 220 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Lac9g1630 405 CDD RING-H2_EL5-like 150 193 - -
Lac9g1630 405 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0601 Lac-Chr7:4809774 Lac9g1630 Lac-Chr9:35612562 1.70E-20 dispersed
Lac7g2857 Lac-Chr7:47695839 Lac9g1630 Lac-Chr9:35612562 1.20E-18 dispersed
Lac8g2606 Lac-Chr8:43680432 Lac9g1630 Lac-Chr9:35612562 5.70E-17 dispersed
Lac9g1630 Lac-Chr9:35612562 Lac9g2378 Lac-Chr9:42937990 1.70E-19 dispersed
Lac9g1630 Lac-Chr9:35612562 Lac7g0421 Lac-Chr7:3278380 2.70E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1630 - - - 0.0