Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1639 ATGGAGGACTGCATCAGCAGCGATGAGGACTACTATGACTCCGATCGAGAGTCTCTCCACGGTCTCGAGAACGAGGACTCTGAAATTCAGTGGGCCCCTAAAGGTCCTGCCACTAAGGTTATTACGAAAGAATCGCTCCTTGCGGCACAGAAGGAGGACATGCGTAGAGTAATGGAAATGCTATCGTTGAGGGAATATCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTAGAGAAATTGTTTGCGGTACTTGTGGAGAAGGGGAGGAGTCACTTGTTTGCTACAGCTGGTGTTACTATGATTGACAATCAAAGTAATAGTTCCTCTGAGCCTTCCTCCATGGTGATGTGCGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACAAGAGTGGACTGTGGGCATTGCTTTTGTAACAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGATGCATGGCCCATAAATGCAATGCTATTTGTGATGAGGCTGTTGTTAGGAATCTAGTTAGTAAGAGGCATCCAGATCTTGCAAATAAATTTGATCGTTTTCTTCTTGAGTCATACATTGAGGATAACAAAAGAGTGAAATGGTGTCCAAGTACACCTCACTGTGGCAATGCTATACGTGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTCTACAATTTTGTTTCAGTTGCTTATCAGAAGCTCACTCGCCATGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCCGAGATGAGTCTGAAACAGTTAACTGGATTACGGTACATACAAAGCCCTGTCCAAAGTGCCACAAACCTGTGGAGAAGAATGGTGGCTGTAACCTCGTCAGCTGCATCTGTGGACAAGCATTTTGTTGGCTGTGTGGTGGTGCCACTGGTCGAGAACACACTTGGTCGAGTATTTCTGGTCACAGTTGTGGGCGTTACAAGGAAGAATCAGAGCAGAAAGCCGAACGAGCAAAACGGGATTTGTATCGCTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATCTCGATTTCTGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTATAGACTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACCCAGGAGGAAAGAGAGATAAAGCAGCATCTATTTGAGGACCAACAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAGGAACCATTTGATCAATACACTAAAGATAAGGTAATGGAGATAAGGATGCAAGTCATCAATCTGTCAGTTATCACTGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTTTGGGTACTCTTGAACTGGGTATTCACAATATTGCTCCTTACAAGTCGAAGGGCATTGAGAAGGCTCTGGAACTTTCTGCTTGTTGGAACAGCAAAGCAAATACTACTGACAAATATTTGCCATCTGACTGTGGTACAAGTGGAGGATTGTCAGAACGCGATCGACTGACTGGCTTGAATTCGGACGAGAAGGGATGCTCGTCTAGGAAGCGTGCCAGAGCAGAAGTTGTTACTGGCAACTTTTTTGATCTAAACTTGCCTGCTGAGGTGGTTGATAGAAACTGA 1770 43.22 MEDCISSDEDYYDSDRESLHGLENEDSEIQWAPKGPATKVITKESLLAAQKEDMRRVMEMLSLREYHARTLLIHYRWDVEKLFAVLVEKGRSHLFATAGVTMIDNQSNSSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLYRLFRSRRVLSYSYPFAFYMFGDELFKDEMTQEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGTLELGIHNIAPYKSKGIEKALELSACWNSKANTTDKYLPSDCGTSGGLSERDRLTGLNSDEKGCSSRKRARAEVVTGNFFDLNLPAEVVDRN 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35734024 35738835 + Lag0009126.1 Lac9g1639 620565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1639 589 CDD BRcat_RBR_ANKIB1 197 261 - -
Lac9g1639 589 SUPERFAMILY RING/U-box 114 202 - -
Lac9g1639 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 60 360 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Lac9g1639 589 CDD RING-HC_RBR_TRIAD1 117 170 - -
Lac9g1639 589 CDD Rcat_RBR_ARI1-like 273 326 - -
Lac9g1639 589 FunFam RBR-type E3 ubiquitin transferase 113 204 - -
Lac9g1639 589 SUPERFAMILY RING/U-box 260 325 - -
Lac9g1639 589 Gene3D - 248 496 - -
Lac9g1639 589 SUPERFAMILY RING/U-box 191 259 - -
Lac9g1639 589 Pfam IBR domain 272 314 IPR054694 -
Lac9g1639 589 FunFam RBR-type E3 ubiquitin transferase 248 496 - -
Lac9g1639 589 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 49 83 IPR048962 -
Lac9g1639 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Lac9g1639 589 SMART ibrneu5 190 252 IPR002867 GO:0008270(InterPro)
Lac9g1639 589 SMART ibrneu5 260 325 IPR002867 GO:0008270(InterPro)
Lac9g1639 589 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 GO:0008270(InterPro)
Lac9g1639 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Lac9g1639 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Lac9g1639 589 Pfam Ariadne domain 329 589 IPR045840 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1639 K11968 - - csv:101205066 1154.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1808 Lac-Chr6:29725082 Lac9g1639 Lac-Chr9:35734024 3.50E-53 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac9g1639 . 164 589 ARIADNE family AT4G34370 72.0 2.6e-183 639.0
Lac9g1639 . 58 542 ARIADNE family AT2G16090 77.2 2.4e-225 778.9
Lac9g1639 . 38 543 ARIADNE family AT3G27710 61.6 5.6e-183 638.3
Lac9g1639 . 44 522 ARIADNE family AT3G27720 54.7 6.1e-144 508.4
Lac6g1808 . 1 540 ARIADNE family AT1G05890 64.3 3.3e-221 765.4
Lac4g1746 . 61 535 ARIADNE family AT1G05890 73.9 5.3e-219 758.1
Lac6g1808 . 19 595 ARIADNE family AT1G65430 74.4 5.8e-263 904.0
Lac4g1746 . 16 589 ARIADNE family AT1G65430 69.7 1.9e-245 845.9
Lac6g1808 . 15 459 ARIADNE family AT2G31780 54.5 8.8e-150 527.7
Lac4g1746 . 58 454 ARIADNE family AT2G31780 58.1 9.4e-144 507.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46