Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1686 ATGTTGAAGTCGGAGATGACGGTGGTCGAAACACAGACGGCTCGGGTCGAATGGCGTCGAGCCACCCACGGTGACTGTCGCAGCTTGTCATCCGTCTCGACTCCTGCGAGTCGGGTCGATGATTTTCAGGATCTCGTTGGAACTGGAGGTTGGACTGAGTTGGCTCGAAATGAGATCTCCTCGACGAAGTTTTCGACTAATCTAACTGTGTCAACAACTCAGACGTATTCGCCTCCGCCTGAGGCAAACTCCGTGGTTGTGGGAGAGATTCCAAGGAAAAGAAAAACCAACAACAACAACAAGGAATTCAAATCCAAAGTGGGAAATGTCCAAGTTGAGGCTGGAAAAAACAGAGACAAAAGAATCAAACCAAATATTGAAGAAGAAGAAGAATCATCAAAGATTACAGAGCAAACAGAGACATCAAAACAGAATTCAAAAGCTTCCGAAGAAGTTCAAAAATCGGATTACGTTCATGTTAGAGCTCGTCGAGGTCAAGCCACAGACAGCCATAGTCTTGCAGAAAGAGCGAGGAGAGAGAAAATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTACCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATAAATTATGTTCAATCTCTTCAGCAACAAGTAGAGTTCTTGTCAATGAAGCTGGCTACTCTGAATCCGAGATTGGATTTCATCAATGTCGATGACCTCTTTGCCAAACAGGTGTTACCGACGATAGAAATCTCACCGGAAACGGCTAATTCTTACTTCAATCAACTCGGAATCGGCTCAAGCTCTGTAACAGTCCCACAAACTCCATTGATGAACTTGGCTTCTATTACTCATTTCGAGCTCTGTTCGAGTTGGGGTGAAGAATTACAGAGCCTTGGGCCGCCATTGTTGTCGCCATCGAGCTTTTTATCGCAGCAATATCCAGGCATTGAAGATGAAAAGGAAACATTTGTAGACGACAAAGTTGTTGTTCCATTTTAA 1008 43.75 MLKSEMTVVETQTARVEWRRATHGDCRSLSSVSTPASRVDDFQDLVGTGGWTELARNEISSTKFSTNLTVSTTQTYSPPPEANSVVVGEIPRKRKTNNNNKEFKSKVGNVQVEAGKNRDKRIKPNIEEEEESSKITEQTETSKQNSKASEEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKLATLNPRLDFINVDDLFAKQVLPTIEISPETANSYFNQLGIGSSSVTVPQTPLMNLASITHFELCSSWGEELQSLGPPLLSPSSFLSQQYPGIEDEKETFVDDKVVVPF 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36435577 36438013 + Lag0009173.1 Lac9g1686 620612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1686 335 CDD bHLH_AtBPE_like 156 242 - -
Lac9g1686 335 SMART finulus 172 222 IPR011598 GO:0046983(InterPro)
Lac9g1686 335 Gene3D - 163 237 IPR036638 GO:0046983(InterPro)
Lac9g1686 335 MobiDBLite consensus disorder prediction 110 157 - -
Lac9g1686 335 FunFam Basic helix-loop-helix transcription factor 163 235 - -
Lac9g1686 335 MobiDBLite consensus disorder prediction 113 137 - -
Lac9g1686 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 216 IPR011598 GO:0046983(InterPro)
Lac9g1686 335 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983(InterPro)
Lac9g1686 335 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 84 269 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac9g1686 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 236 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2147 Lac-Chr8:39867065 Lac9g1686 Lac-Chr9:36435577 1.00E-35 dispersed
Lac4g1456 Lac-Chr4:33028543 Lac9g1686 Lac-Chr9:36435577 8.30E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24425 PF00010 HLH 2.60E-06 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1686 - - - 0.0