Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1723 ATGGCTACCTACTACTCTAGTTCGAATAACGAAAGGGATGCTACTCCTATCCTCTATCCAAGGGGAGCTTTGCTCGGTTCGTATGAGGAAACGCCAGTACTTCCCCGGAATATGATGATGCATGTAAATTCTGGTACATACATGGACTCGTTGCCTTCACAGGCGCAAAATGGTTGTGGTCAGATAGCATCGGCTGGAGCAGCAGGAACCACCCAACAGCAGCAAGAGTTTTTATCAAATCTTGGTGGTTCGCAAATTGCTGAGCATGATTTCAATACATGGAGAGAGGACAGGAGTGAAATGCTTGGTACGAACTCGATGCGTGGCCCTACCAATGTTCTTCATGGAGGGCAAAATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGTACACAAATCCCATCTGGAATCCAGATACCTTCAATCACATATAGGAATTCGGATATGGGTTTAACTTCATTCTTGAGTCCTAATCCAACGAATTCAGGTGAGGATGGCTGCAGAAATGGCGCTTCTCGAGACGACCAGTTGAGAAGTGGAGAAAACTTGCCACCTAATTTTCAAGAATTGGCTAAGGGTGACTTATCTCAATACAGCATGTCTAGTATTGCAAGAACTATGCCCAATTCGAAGTACCTTAAGGCTGCACAACAACTACTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGCCCACATGAGCATGAAACTAGGAGTGCAAAGAATGGTGATGCAGGAACCAAAAATGACAGTTCCTTGCTCACTGCGAGCGGAGTGTCTTCAAACCCTCAAGAAATTGGGAGCAATTCAACATGTGAGCTCTCGCATGCCGAAAAACAGGATTTGCAGAACAAGATGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCACCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCCGGATGTGGGGCATCTAAGCCATATACTGCACTTGCACTCCAAACTATTTCTCGTCATTTTCGGTGCTTACGGGATGCAATAGCTGGTCAAGTAAGAGCTACTCGTAAAAGCCTGGGAGAGCATGAAAATTCTGGAAATGACAAGGGAGTCGGAATCACTCGTCTCCGATATGTGGATCAGCAATTAAGGCAACAAAGGGCTCTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCGATTCTCCGGGCCTGGCTGTTTGAGCACTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTTGCAAGGCAAACAGGCTTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCACGTGTGCGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAGATAGGCAGTGCAGAAATGGACTCTATATCATCATCTGAAAATGCTGGCAAAGCAACAAAAGGAGATAACAGGACCTTTGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGTTCAACAGCCACCGAAAGATGCAGCGCCGGAGACATTAACGACTTAAAATCTGATCAAGCATCTAATCTTGGAAATTCAGGTTCCACGAGACTAGCCAATTTCCAAAATGGTGCTCATATCGAATCCCAAAACGAGCTGGTAAAGTCGAGGGAGGAGCTGAGGCCGAATGTAAATAACTCTAATTTCTTTCCCGATACAATTGTCCACTCTCAGGCAGGGAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAATTGGGAAGGTTCGGGACGGTTAGCGGGGTATCACTGACGTTGGGTTTGCAGCATTGTGAGGGTGGTAGCATACCTATGCCTGCTGGGACACACCACGGTTTTGCAGCCATGAGAGGAGAGGATATGTACAACACCGCCGCATCTTCTCTCGGGGAAACAGTCCATTTTGAATGCGTAAATGCTGGTAATCCGCAACCGAGGTTCGGCCCTTCTCATCTCTATCATGATTTGTTGTGTAAAAGTGCAACTGTACAAGATTGCTGGTCTGCATCATATACTAGATGA 2091 45.53 MATYYSSSNNERDATPILYPRGALLGSYEETPVLPRNMMMHVNSGTYMDSLPSQAQNGCGQIASAGAAGTTQQQQEFLSNLGGSQIAEHDFNTWREDRSEMLGTNSMRGPTNVLHGGQNLQGQGLSLTLSTQIPSGIQIPSITYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDDQLRSGENLPPNFQELAKGDLSQYSMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSPHEHETRSAKNGDAGTKNDSSLLTASGVSSNPQEIGSNSTCELSHAEKQDLQNKMTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSAEMDSISSSENAGKATKGDNRTFEDDKEEDLQQSASSTATERCSAGDINDLKSDQASNLGNSGSTRLANFQNGAHIESQNELVKSREELRPNVNNSNFFPDTIVHSQAGSDRFMAAAAAYHMSELGRFGTVSGVSLTLGLQHCEGGSIPMPAGTHHGFAAMRGEDMYNTAASSLGETVHFECVNAGNPQPRFGPSHLYHDLLCKSATVQDCWSASYTR 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36821664 36824755 - Lag0009210.1 Lac9g1723 620649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1723 696 Gene3D - 401 480 - -
Lac9g1723 696 MobiDBLite consensus disorder prediction 231 286 - -
Lac9g1723 696 FunFam BEL1-like homeodomain protein 4 409 471 - -
Lac9g1723 696 MobiDBLite consensus disorder prediction 511 550 - -
Lac9g1723 696 MobiDBLite consensus disorder prediction 153 192 - -
Lac9g1723 696 ProSiteProfiles 'Homeobox' domain profile. 403 466 IPR001356 GO:0003677(InterPro)
Lac9g1723 696 SMART prehox3 201 356 IPR006563 -
Lac9g1723 696 MobiDBLite consensus disorder prediction 153 167 - -
Lac9g1723 696 SUPERFAMILY Homeodomain-like 407 473 IPR009057 -
Lac9g1723 696 SMART HOX_1 406 470 IPR001356 GO:0003677(InterPro)
Lac9g1723 696 MobiDBLite consensus disorder prediction 478 550 - -
Lac9g1723 696 MobiDBLite consensus disorder prediction 480 494 - -
Lac9g1723 696 MobiDBLite consensus disorder prediction 253 286 - -
Lac9g1723 696 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 150 503 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac9g1723 696 Pfam Homeobox KN domain 423 462 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac9g1723 696 Pfam Associated with HOX 208 355 IPR006563 -
Lac9g1723 696 CDD homeodomain 406 467 IPR001356 GO:0003677(InterPro)
Lac9g1723 696 MobiDBLite consensus disorder prediction 231 252 - -
Lac9g1723 696 MobiDBLite consensus disorder prediction 495 510 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2488 Lac-Chr1:46314448 Lac9g1723 Lac-Chr9:36821664 1.00E-64 dispersed
Lac4g2798 Lac-Chr4:46677984 Lac9g1723 Lac-Chr9:36821664 5.50E-93 dispersed
Lac6g0198 Lac-Chr6:1548481 Lac9g1723 Lac-Chr9:36821664 2.10E-35 dispersed
Lac7g2385 Lac-Chr7:40457944 Lac9g1723 Lac-Chr9:36821664 7.30E-63 dispersed
Lac9g0810 Lac-Chr9:17043637 Lac9g1723 Lac-Chr9:36821664 5.30E-72 dispersed
Lac9g1723 Lac-Chr9:36821664 Lac9g2737 Lac-Chr9:45532646 2.30E-80 dispersed
Lac9g1723 Lac-Chr9:36821664 Lac10g2756 Lac-Chr10:42068568 5.30E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24428 PF07526 POX 5.20E-51 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1723 - - - 0.0