Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1735 ATGTTGAGATCGAAGAAGAAGACTGAAAAAGAAACGAAAGAAATGAAGATCCGTTGTGATGTTTGCGACAAAGAAGAAGCCTCTGTTTTCTGCCCCTCCGACGAAGCCGCCCTCTGCGCCGCCTGTGACCACCACGTCCACCGCGCCAACAAGCTCGCCGGAAAACACGGCCGTTTCTCTCTCCTCCGATCCGCCGATTTGCCGCCGTTGTGCGATATCTGCCAGCTCCGGCGAGCATTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGTGACATTCCAATCCACGGCGCCAACGAACACACCCAGAAGCACAGCCGCTTTCTTCTCACCGGAGTGAAGATCTCGCCGTCGCCGGCGACTTCTTCTTCCTCCTCCACCTCCGTCGCCGGCGAGGAGGAGGCTGCAATTGAAGCTGAAACTGGGTTCTTCAATGCGTGCTCGAGGAAGAGGCCTAAAATGGCGTTGTCGTCTAATGGGTTGCTTCGAGGTCCTTTAATGGAGGATTTACAGCCATCAATCAGTGATAATGGGGTTTCGTTTTCCACTAGCAGCATTTCAGAGTATTTGGAGAGTTTGCCCGGTTGGTGTGTTGAGGAATTTCTTGATTCTTCTTCTGCCACTGATGTTTTCTGTAAAGTTTGA 654 51.83 MLRSKKKTEKETKEMKIRCDVCDKEEASVFCPSDEAALCAACDHHVHRANKLAGKHGRFSLLRSADLPPLCDICQLRRAFLFCREDRAILCRECDIPIHGANEHTQKHSRFLLTGVKISPSPATSSSSSTSVAGEEEAAIEAETGFFNACSRKRPKMALSSNGLLRGPLMEDLQPSISDNGVSFSTSSISEYLESLPGWCVEEFLDSSSATDVFCKV 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36988123 36988776 + Lag0009222.1 Lac9g1735 620661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1735 217 CDD Bbox1_BBX-like 70 113 IPR049808 -
Lac9g1735 217 ProSiteProfiles Zinc finger B-box type profile. 70 113 IPR000315 GO:0008270(InterPro)
Lac9g1735 217 Pfam B-box zinc finger 17 58 IPR000315 GO:0008270(InterPro)
Lac9g1735 217 Pfam B-box zinc finger 69 105 IPR000315 GO:0008270(InterPro)
Lac9g1735 217 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270(InterPro)
Lac9g1735 217 PANTHER B-BOX ZINC FINGER PROTEIN 22 15 209 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lac9g1735 217 CDD Bbox1_BBX-like 19 61 IPR049808 -
Lac9g1735 217 SMART bboxneu5 14 61 IPR000315 GO:0008270(InterPro)
Lac9g1735 217 SMART bboxneu5 66 113 IPR000315 GO:0008270(InterPro)
Lac9g1735 217 FunFam B-box zinc finger protein 21 15 111 - -
Lac9g1735 217 Gene3D Classic Zinc Finger 14 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2401 Lac-Chr1:45428780 Lac9g1735 Lac-Chr9:36988123 1.20E-14 dispersed
Lac6g0470 Lac-Chr6:3872291 Lac9g1735 Lac-Chr9:36988123 6.60E-43 dispersed
Lac5g2421 Lac-Chr5:42833531 Lac9g1735 Lac-Chr9:36988123 3.60E-30 transposed
Lac4g1427 Lac-Chr4:32701744 Lac9g1735 Lac-Chr9:36988123 1.10E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24429 PF00643 zf-B_box 6.30E-06 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1735 - - - 0.0