Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1749 ATGCGAGCTCTTTGCGACGTCTGTGAAACCGCCGCCGCAACCCTCTTCTGCGCCGCCGACGAGGCCGCCCTTTGCCCCGCCTGCGATCACGAGGTCCACATGTGTAACAAACTTGCTAGGAGACATGTTCGTGTTGGACTTGCCGAACCCTGCGATGTTCTGCTGTGTGATGTGTGTGAAACCGCACCTGCTTTCTTTTACTGTGATGTAGACGGTAGCTCCCTATGCTTGCAATGTGATATGATTGTGCATGTTGGAGGTAAAAGATCCCATGGAAGGTTCCTCCTGTTGAGGCAGAGAATTGAGTTTCCAGAGGATAAACCGAGCGAAGTTCATGAATTTTTTCAGAAACCTGGTAGCACAAATGAATTTAGGAGACAAAAAGTTCAGCCTGCTAACCTCACTCTGAGAGAGAATAAACAGTATGAGAATGGCTTGTTAGCTCCAATGGTAGAAAATAGTGATGCTGGTGGCAATATGGACTGCAACTTGATTGACTTGAATGCAGGGCCTCAGAGGATAAATTGTCAAACACCTGATAATCAGGAACCGCACGCCGAAGTTCATCGTAGGTACAATCAAGAACCTGAAGAGTATGATGCTTGCAAGATCCTTCAAACAAGAACCTGA 630 47.3 MRALCDVCETAAATLFCAADEAALCPACDHEVHMCNKLARRHVRVGLAEPCDVLLCDVCETAPAFFYCDVDGSSLCLQCDMIVHVGGKRSHGRFLLLRQRIEFPEDKPSEVHEFFQKPGSTNEFRRQKVQPANLTLRENKQYENGLLAPMVENSDAGGNMDCNLIDLNAGPQRINCQTPDNQEPHAEVHRRYNQEPEEYDACKILQTRT 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37162144 37163846 - Lag0009236.1 Lac9g1749 620675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1749 209 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
Lac9g1749 209 CDD Bbox1_BBX-like 55 96 IPR049808 -
Lac9g1749 209 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lac9g1749 209 Pfam B-box zinc finger 4 34 IPR000315 GO:0008270(InterPro)
Lac9g1749 209 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Lac9g1749 209 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Lac9g1749 209 CDD Bbox1_BBX-like 4 47 IPR049808 -
Lac9g1749 209 Gene3D Classic Zinc Finger 2 92 - -
Lac9g1749 209 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 134 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1749 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2983 Lac-Chr1:50557601 Lac9g1749 Lac-Chr9:37162144 2.80E-45 dispersed
Lac5g2128 Lac-Chr5:39879952 Lac9g1749 Lac-Chr9:37162144 7.10E-53 dispersed
Lac2g0172 Lac-Chr2:1303501 Lac9g1749 Lac-Chr9:37162144 8.40E-19 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0573 . 1 339 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.2e-83 307.8
Lac3g0282 . 5 374 C2C2-CO-like Transcription Factor Family AT5G57660 51.1 8.2e-66 248.4
Lac9g1940 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 50.6 3.1e-92 336.3
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.6 2.0e-86 317.0
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 1.6e-83 307.4
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 1.6e-83 307.4
Lac4g1427 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 56.1 3.7e-52 203.0
Lac9g1735 . 15 216 C2C2-CO-like Transcription Factor Family AT1G75540 51.6 3.0e-46 183.3
Lac5g2128 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.6 6.4e-56 214.5
Lac1g2983 . 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 70.5 9.0e-50 194.1
Lac9g1749 . 1 197 C2C2-CO-like Transcription Factor Family AT2G21320 51.3 6.4e-48 188.0
Lac5g2128 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 9.5e-58 220.7
Lac9g1749 . 1 196 C2C2-CO-like Transcription Factor Family AT4G38960 55.1 1.3e-51 200.3
Lac1g2983 . 1 164 C2C2-CO-like Transcription Factor Family AT4G38960 59.8 6.2e-49 191.4
Lac4g1427 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.1 5.8e-55 211.8
Lac6g0470 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.7 2.0e-47 186.8
Lac9g1735 . 15 209 C2C2-CO-like Transcription Factor Family AT4G39070 54.2 1.8e-43 173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030681 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24431 PF00643 zf-B_box 1.80E-05 No_clan Lac TF