Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1749 ATGCGAGCTCTTTGCGACGTCTGTGAAACCGCCGCCGCAACCCTCTTCTGCGCCGCCGACGAGGCCGCCCTTTGCCCCGCCTGCGATCACGAGGTCCACATGTGTAACAAACTTGCTAGGAGACATGTTCGTGTTGGACTTGCCGAACCCTGCGATGTTCTGCTGTGTGATGTGTGTGAAACCGCACCTGCTTTCTTTTACTGTGATGTAGACGGTAGCTCCCTATGCTTGCAATGTGATATGATTGTGCATGTTGGAGGTAAAAGATCCCATGGAAGGTTCCTCCTGTTGAGGCAGAGAATTGAGTTTCCAGAGGATAAACCGAGCGAAGTTCATGAATTTTTTCAGAAACCTGGTAGCACAAATGAATTTAGGAGACAAAAAGTTCAGCCTGCTAACCTCACTCTGAGAGAGAATAAACAGTATGAGAATGGCTTGTTAGCTCCAATGGTAGAAAATAGTGATGCTGGTGGCAATATGGACTGCAACTTGATTGACTTGAATGCAGGGCCTCAGAGGATAAATTGTCAAACACCTGATAATCAGGAACCGCACGCCGAAGTTCATCGTAGGTACAATCAAGAACCTGAAGAGTATGATGCTTGCAAGATCCTTCAAACAAGAACCTGA 630 47.3 MRALCDVCETAAATLFCAADEAALCPACDHEVHMCNKLARRHVRVGLAEPCDVLLCDVCETAPAFFYCDVDGSSLCLQCDMIVHVGGKRSHGRFLLLRQRIEFPEDKPSEVHEFFQKPGSTNEFRRQKVQPANLTLRENKQYENGLLAPMVENSDAGGNMDCNLIDLNAGPQRINCQTPDNQEPHAEVHRRYNQEPEEYDACKILQTRT 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37162144 37163846 - Lag0009236.1 Lac9g1749 620675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1749 209 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
Lac9g1749 209 CDD Bbox1_BBX-like 55 96 IPR049808 -
Lac9g1749 209 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lac9g1749 209 Pfam B-box zinc finger 4 34 IPR000315 GO:0008270(InterPro)
Lac9g1749 209 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Lac9g1749 209 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Lac9g1749 209 CDD Bbox1_BBX-like 4 47 IPR049808 -
Lac9g1749 209 Gene3D Classic Zinc Finger 2 92 - -
Lac9g1749 209 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 134 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2983 Lac-Chr1:50557601 Lac9g1749 Lac-Chr9:37162144 2.80E-45 dispersed
Lac5g2128 Lac-Chr5:39879952 Lac9g1749 Lac-Chr9:37162144 7.10E-53 dispersed
Lac2g0172 Lac-Chr2:1303501 Lac9g1749 Lac-Chr9:37162144 8.40E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24431 PF00643 zf-B_box 1.80E-05 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1749 - - - 0.0