Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1781 ATGCAACCCAGGACTAGATTATCAAGTTTGAGAAAACTACAGAGGCGTCGTCAAACCGCGAGTCTCGACGGAGGATTGCCACTTTCACGAGGAGCAGTGGCTGTCTCCAGCAGCAATATGGACCAACTGATTCGACGCGACGCTCTCATTCAGAATCCAGCCGCGCCCTCCATTGTACCATGCATTGAGCTTTCAGGGCACCCAAATCGTTCTCAATCCAGTTCCAGGTCTGAAGGGGAGTTGAAGGATTCTGCAGCTGCTAGAAGAGTTCAGAAGGCTGACAGAGAAAAACTAAGAAGGGACCGATTGAATGAACAATTCGTTGAGCTGGGAAATATTTTAGATCCTGATAGGCCTAAAAATGACAAAGCAACCATTTTAATGGATACAATTCAATTGCTGAAGGATTTGACATCCCAAGTTAACAAACTGAAAACTGAGTATGCAACATTAACAGAAGAATCACGTGAGCTATCCCAGGAAAAGAATGATCTGAGAGAAGAGAAGGCGTTGCTCAAATCTGATATTGAGATTCTTAATGCTCAGTATCAGCAAAGACTCAGGGCTACATACCCTTGGGCTGCCATGGATAACTCGGTTGTCATGGCCCCTGCTCCTTTCCCATTTCCAGTGCCTATGCAAATGCCTCCAGGGCCATTTCCCCTGCATCCATCCTTGCAGCCTTATACGTTCTACGGAAATCAGAATCCTGCAGTAATTTCAAACCCTTGTTCCACCTTTGTCCCATACATAGCTCCTAATTCCTTGATTGAGCAGCAATCCTCCCGAAATGCACCACCTTACTCTCATCCAGGTTATCAGTCTCATAACTTGAGCAAGCAAGAAACAGGGAGCAACTCCTCAAGTGGAAGCAAGATTGAGAAAAGTGTAGATTCTAATGAAGTTGCAACTTACCTGGAGTTGAAGACTCCTGGATCTTCCACAGATCAGGATACCTCGTTTGAACAAACAAACAGTAAGAACAGGAAGGAACATAATCCATCAGAAGAGAGTTCTTCAAGTAGACAAAATATATCAGAAGAGAGTTCTTCAAGTAGATGTTCTTTATCTCGTAGTTTGGAGGCCAATTCGTTTAGTAGCACACTAAATGGACGGAAATCTACTGATTTATGTGGAAACACATAA 1146 43.89 MQPRTRLSSLRKLQRRRQTASLDGGLPLSRGAVAVSSSNMDQLIRRDALIQNPAAPSIVPCIELSGHPNRSQSSSRSEGELKDSAAARRVQKADREKLRRDRLNEQFVELGNILDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEYATLTEESRELSQEKNDLREEKALLKSDIEILNAQYQQRLRATYPWAAMDNSVVMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFYGNQNPAVISNPCSTFVPYIAPNSLIEQQSSRNAPPYSHPGYQSHNLSKQETGSNSSSGSKIEKSVDSNEVATYLELKTPGSSTDQDTSFEQTNSKNRKEHNPSEESSSSRQNISEESSSSRCSLSRSLEANSFSSTLNGRKSTDLCGNT 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37540132 37543506 - Lag0009268.1 Lac9g1781 620707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1781 381 MobiDBLite consensus disorder prediction 261 381 - -
Lac9g1781 381 MobiDBLite consensus disorder prediction 81 96 - -
Lac9g1781 381 Pfam Helix-loop-helix DNA-binding domain 88 137 IPR011598 GO:0046983(InterPro)
Lac9g1781 381 CDD bHLH_AtILR3_like 92 166 - -
Lac9g1781 381 MobiDBLite consensus disorder prediction 1 29 - -
Lac9g1781 381 Coils Coil 127 182 - -
Lac9g1781 381 MobiDBLite consensus disorder prediction 66 80 - -
Lac9g1781 381 MobiDBLite consensus disorder prediction 323 337 - -
Lac9g1781 381 MobiDBLite consensus disorder prediction 338 381 - -
Lac9g1781 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 156 IPR036638 GO:0046983(InterPro)
Lac9g1781 381 MobiDBLite consensus disorder prediction 261 298 - -
Lac9g1781 381 Gene3D - 85 170 IPR036638 GO:0046983(InterPro)
Lac9g1781 381 MobiDBLite consensus disorder prediction 63 96 - -
Lac9g1781 381 PANTHER TRANSCRIPTION FACTOR BHLH121 62 374 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Lac9g1781 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 137 IPR011598 GO:0046983(InterPro)
Lac9g1781 381 SMART finulus 93 143 IPR011598 GO:0046983(InterPro)
Lac9g1781 381 MobiDBLite consensus disorder prediction 306 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3004 Lac-Chr1:50752125 Lac9g1781 Lac-Chr9:37540132 9.50E-56 dispersed
Lac3g0625 Lac-Chr3:4851776 Lac9g1781 Lac-Chr9:37540132 1.10E-08 dispersed
Lac9g1781 Lac-Chr9:37540132 Lac9g2079 Lac-Chr9:40394046 9.90E-09 dispersed
Lac9g1781 Lac-Chr9:37540132 Lac2g1358 Lac-Chr2:11426874 6.90E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24432 PF00010 HLH 9.20E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1781 - - - 0.0