Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g1827 | ATGGAAGACGGCGAGCTTGAATCCTCGAATCCAGAAGTGTTTTCGAGTTCGAATGCCGTTGAGATTCCGAGCAGTTGCTCGATGGATAGTTTCTTTGATGAAATTCTGAAGGATACTCATGCTTGCACACACGCTCATACTTGCAACCCTCCTGGCCCTGATTATTCACATACGCACACCTGTTTTCATGTCCATACTAAAATTGTCTCCTCCCCCACTGAAGAAAAGGTTTCCACTGACGACACAGCAGAGTCTGTGGATAAAAAGACTAAGAAACGCCCGCTAGGTAATCGTGAAGCAGTTCGTAAATACCGTGAGAAGAAAAAGGCGAGGGCTGCATCATTGGAAGATGAAGTTGTGAGGTTGAGGGCCTTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTAGGGGAAGAATTGAAGGGGAGATTGGAACATTTCCATATCAGAAATCAGCCAATTCAAATCTGCCCAGCCAAAATGTCCCTGGTAGTTACGTGATAAATCCATGTAATGTGCAGTGCAATGATCAGGCGTATTGCCTCCATTCAGGGGCCGATGGAAAAAGTGGGGAGAGCGTTTTGTTGGATGGGCAAAGTTTTAGTGCTTGTGACTTTGAAAATCTTCAATGCTTGGCAAATCAAAACACTGGAGCAAAGGAACTTCCTGACTGTGGATTAGGAGACACAATTTCTAACATTAATTGCTCCGACTTAAATCAGAAGAAAGGTGAAACCTGA | 792 | 44.44 | MEDGELESSNPEVFSSSNAVEIPSSCSMDSFFDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPTEEKVSTDDTAESVDKKTKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYQKSANSNLPSQNVPGSYVINPCNVQCNDQAYCLHSGADGKSGESVLLDGQSFSACDFENLQCLANQNTGAKELPDCGLGDTISNINCSDLNQKKGET | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 38077918 | 38078709 | + | Lag0009314.1 | Lac9g1827 | 620753 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g1827 | 263 | MobiDBLite | consensus disorder prediction | 72 | 96 | - | - | |
Lac9g1827 | 263 | Pfam | Basic region leucine zipper | 87 | 134 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g1827 | 263 | FunFam | Basic leucine zipper 24 | 75 | 153 | - | - | |
Lac9g1827 | 263 | Gene3D | - | 75 | 153 | - | - | |
Lac9g1827 | 263 | MobiDBLite | consensus disorder prediction | 77 | 96 | - | - | |
Lac9g1827 | 263 | Coils | Coil | 98 | 132 | - | - | |
Lac9g1827 | 263 | SUPERFAMILY | Leucine zipper domain | 89 | 135 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g1827 | 263 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 87 | 134 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g1827 | 263 | PANTHER | CCAAT/ENHANCER BINDING PROTEIN | 1 | 178 | IPR031106 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER) | |
Lac9g1827 | 263 | SMART | brlzneu | 84 | 152 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g1827 | 263 | CDD | bZIP | 90 | 144 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g1318 | Lac-Chr4:31291197 | Lac9g1827 | Lac-Chr9:38077918 | 2.50E-88 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24434 | PF07716 | bZIP_2 | 1.80E-14 | CL0018 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g1827 | K25785 | - | csv:101219501 | 486.878 |