Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1827 ATGGAAGACGGCGAGCTTGAATCCTCGAATCCAGAAGTGTTTTCGAGTTCGAATGCCGTTGAGATTCCGAGCAGTTGCTCGATGGATAGTTTCTTTGATGAAATTCTGAAGGATACTCATGCTTGCACACACGCTCATACTTGCAACCCTCCTGGCCCTGATTATTCACATACGCACACCTGTTTTCATGTCCATACTAAAATTGTCTCCTCCCCCACTGAAGAAAAGGTTTCCACTGACGACACAGCAGAGTCTGTGGATAAAAAGACTAAGAAACGCCCGCTAGGTAATCGTGAAGCAGTTCGTAAATACCGTGAGAAGAAAAAGGCGAGGGCTGCATCATTGGAAGATGAAGTTGTGAGGTTGAGGGCCTTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTAGGGGAAGAATTGAAGGGGAGATTGGAACATTTCCATATCAGAAATCAGCCAATTCAAATCTGCCCAGCCAAAATGTCCCTGGTAGTTACGTGATAAATCCATGTAATGTGCAGTGCAATGATCAGGCGTATTGCCTCCATTCAGGGGCCGATGGAAAAAGTGGGGAGAGCGTTTTGTTGGATGGGCAAAGTTTTAGTGCTTGTGACTTTGAAAATCTTCAATGCTTGGCAAATCAAAACACTGGAGCAAAGGAACTTCCTGACTGTGGATTAGGAGACACAATTTCTAACATTAATTGCTCCGACTTAAATCAGAAGAAAGGTGAAACCTGA 792 44.44 MEDGELESSNPEVFSSSNAVEIPSSCSMDSFFDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPTEEKVSTDDTAESVDKKTKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYQKSANSNLPSQNVPGSYVINPCNVQCNDQAYCLHSGADGKSGESVLLDGQSFSACDFENLQCLANQNTGAKELPDCGLGDTISNINCSDLNQKKGET 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38077918 38078709 + Lag0009314.1 Lac9g1827 620753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1827 263 MobiDBLite consensus disorder prediction 72 96 - -
Lac9g1827 263 Pfam Basic region leucine zipper 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1827 263 FunFam Basic leucine zipper 24 75 153 - -
Lac9g1827 263 Gene3D - 75 153 - -
Lac9g1827 263 MobiDBLite consensus disorder prediction 77 96 - -
Lac9g1827 263 Coils Coil 98 132 - -
Lac9g1827 263 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1827 263 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1827 263 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 178 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Lac9g1827 263 SMART brlzneu 84 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1827 263 CDD bZIP 90 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1318 Lac-Chr4:31291197 Lac9g1827 Lac-Chr9:38077918 2.50E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24434 PF07716 bZIP_2 1.80E-14 CL0018 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1827 K25785 - csv:101219501 486.878