Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1835 ATGTCTTCTAAGGAAGTGATTGCAGAGGGAGAGAGTCAGCAGGCCAAGGACTATGTGGATCCGCCACCAGCTCCATTGATGGGTTTCTCCGAGCTGAAGCTATGGTCTTTTTACAGAGCTGTAATTGCAGAGTTCATGGCCACTCTGCTTTTCCTGTACATCACCATCGCCACTGTCATTGGAAACAATGCACAAACAGGACCCTGTTCTGGCGTTGGCCTTCTCGGCATAGCATGGGCCTTTGGCGCCATGATCTTCGTCCTCGTTTACTGCACTGCTGGTATTTCAGGTGGCCATATCAACCCCGCCGTCACGTTCGGGCTGCTGTTGGCCAGAAGGGTGTCGCTGATCCGCGCGGTGGCTTACATGGCGGCCCAGTGTCTAGGAGCCATTGCCGGCGTTGCCTTGGTTAAATCTTTCATGAGGCATGCCTACAACAGCCACGGCGGCGGAGCCAACCTCGTCGCCGCCGGCATCAGCAAAGGCACCGCTCTCGGTGCCGAGATCATCGGCACTTTTCTGCTGGTCTACACTGTGTTTTCAGCCACTGACCCTAAAAGAAATGCTCGCGATTCCCATGTTCCTGTTTTGGCTCCATTGCCCATTGGACTGGCCGTCTTTGTTGTGCACCTTGCCACCATTCCGATTACCGGCACCGGCATCAACCCTGCTCGGAGCTTAGGCGCTGCGGTCGTATTCAACAACAGAAGAGTCTGGAGCCACCATTGGATATTTTGGGTAGGGCCATTTGTTGGGGCGCTGGCAGCGGCGGTGTACCACCAGTACGTTCTCAGAGCGGCGGCCGTCAAGGCACTTGGATCTTTCCGCAGCAACCGCTCCGTTTGA 846 55.67 MSSKEVIAEGESQQAKDYVDPPPAPLMGFSELKLWSFYRAVIAEFMATLLFLYITIATVIGNNAQTGPCSGVGLLGIAWAFGAMIFVLVYCTAGISGGHINPAVTFGLLLARRVSLIRAVAYMAAQCLGAIAGVALVKSFMRHAYNSHGGGANLVAAGISKGTALGAEIIGTFLLVYTVFSATDPKRNARDSHVPVLAPLPIGLAVFVVHLATIPITGTGINPARSLGAAVVFNNRRVWSHHWIFWVGPFVGALAAAVYHQYVLRAAAVKALGSFRSNRSV 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38123000 38124912 + Lag0009322.1 Lac9g1835 620761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1835 281 ProSitePatterns MIP family signature. 99 107 IPR022357 -
Lac9g1835 281 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 277 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Lac9g1835 281 Gene3D Glycerol uptake facilitator protein. 24 281 IPR023271 -
Lac9g1835 281 FunFam Probable aquaporin PIP1-2 24 279 - -
Lac9g1835 281 SUPERFAMILY Aquaporin-like 31 265 IPR023271 -
Lac9g1835 281 CDD MIP 39 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g1835 281 Pfam Major intrinsic protein 31 260 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g1835 281 NCBIfam MIP family channel protein 43 259 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g1835 281 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g1835 281 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g1835 281 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g1835 281 PRINTS Major intrinsic protein family signature 81 105 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g1835 281 PRINTS Major intrinsic protein family signature 243 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac9g1835 281 PRINTS Major intrinsic protein family signature 118 137 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2417 Lac-Chr8:42264865 Lac9g1835 Lac-Chr9:38123000 2.90E-114 dispersed
Lac9g1835 Lac-Chr9:38123000 Lac9g2580 Lac-Chr9:44358020 6.60E-111 dispersed
Lac4g1299 Lac-Chr4:31049299 Lac9g1835 Lac-Chr9:38123000 3.90E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1835 K09872 - gmx:100306103 463.766