Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g1843 | ATGTTCTCAGAGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGAGGTCGAATCGACATGTGCACAAAGGTTCAGATGCTAGTGGTCGACAGGATGGTCTCCTATGGTACAAAGATAGTGGGCAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAACAATTTACTTGAAGATCAAAGCCAGATGGAGTCAGGCAATTTGAGCTTGCACGAGTCCGGGCCATATGGTACCTTTGTTGGCGTGTATGATGGCCATGGAGGGCCCGAGACATCTCGCTATGTAAATGATCACCTTTTCCAGCATCTTAAAAGGTTTACTTCGGAGCAACAATCCATGTCAGTGGATGTCATACGAAAGGCTTTTCAAGCTACTGAAGAGGGGGTCATTGCTCAAGTTTCGAAACAATGGTCGATGAGGCCACAAATTGCAGCTGTTGGATCTTGCTGCCTTGTTGGTGTAATTTGTGGTGGAACCCTTTACATTGCTAACCTTGGTGATTCACGAGCTGTTTTAGGGAGAGTTGTAAAGGCAACAGGGGAAGTTTTGTCCGTTCAGTTGTCGGCTGAGCATAATGCATCTATAGAGTCTGTGAGGCAGGAGCTCCGTGCCCTGCATCCTGATGACCCACAGATTGTAGTTTTGAAGCATAATGTATGGCGCGTGAAGGGCCTTATACAGATTTCTCGATCTATCGGTGATGTCTATTTAAAGAAAGCTGAGTTCAACCGAGAGCCTCTTTATGCTAAGTTCCGCCTTCGTGAACCTATCAAAAAGCCCATACTGAGCGCCGAACCATCTATTTCAGTGCTCCAATTGCAGCCACAGGATCAGTTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGCAATCAGGAAGCTGTTGATATTGTCCAAAACCATCCACGTAGTGGAAGTGCAAGGAGGCTGGTGAAAGCAGCACTGCAAGAGGCAGCAAAGAAGAGAGAAATGCGATATTCCGATTTGAAGAAGATTGACCGTGGCGTACGGCGACATTTCCACGATGACATCACAGTGATTGTTGTTTTTCTCGACTCAAACCTTGTGAGCCGGGCTAGCTCTACAAAATGTGCAAGCCTATCCGTGCGAGGGGGCGGGGTTAACTTGCGTCCAAACTCATTGGCCCCTTGCACCACACCATCAGACACTGGCATGGCCTGA | 1194 | 47.24 | MFSELMNFLRACFRPRSNRHVHKGSDASGRQDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHESGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFTSEQQSMSVDVIRKAFQATEEGVIAQVSKQWSMRPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPQIVVLKHNVWRVKGLIQISRSIGDVYLKKAEFNREPLYAKFRLREPIKKPILSAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRSGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSTKCASLSVRGGGVNLRPNSLAPCTTPSDTGMA | 397 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 38204733 | 38207148 | + | Lag0009330.1 | Lac9g1843 | 620769 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g1843 | 397 | Gene3D | - | 33 | 367 | IPR036457 | - | |
| Lac9g1843 | 397 | Pfam | Protein phosphatase 2C | 75 | 323 | IPR001932 | - | |
| Lac9g1843 | 397 | SUPERFAMILY | PP2C-like | 56 | 356 | IPR036457 | - | |
| Lac9g1843 | 397 | CDD | PP2Cc | 48 | 355 | IPR001932 | - | |
| Lac9g1843 | 397 | FunFam | Phosphatase 2C family protein | 36 | 365 | - | - | |
| Lac9g1843 | 397 | ProSitePatterns | PPM-type phosphatase domain signature. | 81 | 89 | IPR000222 | GO:0043169(InterPro) | |
| Lac9g1843 | 397 | PANTHER | PROTEIN PHOSPHATASE | 39 | 354 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Lac9g1843 | 397 | ProSiteProfiles | PPM-type phosphatase domain profile. | 47 | 355 | IPR001932 | - | |
| Lac9g1843 | 397 | SMART | PP2C_4 | 39 | 353 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g2623 | Lac-Chr10:40361221 | Lac9g1843 | Lac-Chr9:38204733 | 5.40E-119 | dispersed | |
| Lac10g3064 | Lac-Chr10:45114951 | Lac9g1843 | Lac-Chr9:38204733 | 7.10E-145 | dispersed | |
| Lac13g0870 | Lac-Chr13:7066149 | Lac9g1843 | Lac-Chr9:38204733 | 1.90E-146 | dispersed | |
| Lac8g3063 | Lac-Chr8:47318245 | Lac9g1843 | Lac-Chr9:38204733 | 8.50E-22 | dispersed | |
| Lac9g1843 | Lac-Chr9:38204733 | Lac9g2142 | Lac-Chr9:40949550 | 1.90E-10 | dispersed | |
| Lac11g0967 | Lac-Chr11:10660091 | Lac9g1843 | Lac-Chr9:38204733 | 7.60E-118 | transposed | |
| Lac12g0185 | Lac-Chr12:2079906 | Lac9g1843 | Lac-Chr9:38204733 | 1.50E-110 | transposed | |
| Lac1g3042 | Lac-Chr1:51058272 | Lac9g1843 | Lac-Chr9:38204733 | 2.00E-182 | wgd | |
| Lac4g1279 | Lac-Chr4:30786009 | Lac9g1843 | Lac-Chr9:38204733 | 1.10E-161 | wgd | |
| Lac5g0081 | Lac-Chr5:679443 | Lac9g1843 | Lac-Chr9:38204733 | 6.80E-170 | wgd |
Pathway information