Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g1858 | ATGGATTTCGCCATCAAGTCCTTCAAATCCCACGGCTCTTACAAGTATGTGAGGAAGCTTTCTGGAACAGACGCTGCTCAGGATCAAGAACAGCTTCCCATTCTTTCAGATCAGGAGTCGGATAATCATCACCGGAAACAGTCCGTTATGGATGCGTCTGACCGGAGAGAGGTCGTAGTCAAGATCGATCGGGCAGATGCTTCCAGTAATGTATCGTCGAGAGCGGTGGAGTCGGTGAACTCCAGTGGGAGGATTTGGCGGGAGTCGAGCTATGATTTCTGGAATGATAGTGATGGTAGACGGAATAATGGTGAAGGTGCTAATGGCGATGGCAGGAGTGAGGATTTTGAGTTTAGGCAACATAGGAAGGATGTGGAAGATCCGCCTTCGAAGCTTATTGGGCAGTTTCTGCACAAGCAGAAGGCGTCCGGAGAGATGTCGTTGGATATGGATTTGGAGATGTTGGAACTACCACTTGATAAGACTCTGTCTCCGGTGGCGGAATCTCCGTTGCGACGGAACTCCAGAGAGTTGAAGGTCTCGTTCGAGTCTATTTCAGAGATTTCTGAAAATGATTCGATGCGAAGACGGCATAGAGACTCGCCGGCTGATGAAGAACATAGAGCAGGACAGCAACCGCAGCAGCGTGATCGTCGAGCGTACGGCAATGGTCATGATGATGGTGGTGCTGAGGTGGTGAGATGCACGTCTAATTCGTCGTTTCAGAGAAACGTATCGTTCCAGAGGAAATCCAGCTTGCTTAGAGCTAAAACTAAGTCTAGACTGCTGGACCCGCCTGAACAGCCGGATCGGAGGTCAGGGCGAGTACCAAGATCAGGGCAAATGCGCTCCGGTTTGTTGTCAAAACCCTTGGATGAAGAAGAAGACGATCCATTCTTGGAGGAAGATCTTCCAGATGAGTATAAGAAGGCTAATCTTGGTGTTCTGACTTTGTTACAATGGGCGAGTTTAATTTTGATAATCGCGGCATTGGTATGCACTCTTACGATCCCTTACTGGAGTAAAAAGAATCTATGGAAACTTAGGTTATGGAAGTGGGAGGTTATGATTCTAGTTTTGATATGTGGAAGGCTAGTTTCAGGGTGGGGGATAAGGATAATCGTCTTCTTCATTGAGAGAAACTTTCTACTGCGTAAAAGGGTTCTATACTTTGTTTATGGGGTTAGAAAGGCAGTTCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAAATTATTGTTCGATGACAAAGTTCAAAGAGAAGTCAAAAGCAATGCCCTCGAATATGTGACTAAAGTTCTTGTATGCCTTCTTGTAAGCACTTTGGTTTGGTTGGTGAAAACTTTGATGGTGAAGGTTCTGGCCTCTTCTTTTCATGTGAGTACATATTTCGATAGGATTCAGGATGCACTATTTAACCAATATGTAATTGAGACACTGTCAGGACCGCCATTGATAGAGATTCAAAAGAACGAGGAAGAAGAAGAGAGGCTTGCAGAAGAGGTTATTAAATTACAGAATGCAGGGGCCACCATCCCTCCTGATCTAAAGGCAACTGCCTTTCCAACTACAAAGGGTGGACGAGTGATTGGGAGTGGAGGACTACAGAAAAGCCCTCGTGGAAGAAGTGCCAAGCTCTCACGGGCGCTTTCCAAAAATGGCGACGAGGGTATAACAATTGATCATTTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAACATTGTTCGACATGGAGCTCTTTCAACTTTGGATGAACAAATAAAGGATTCAACTCACGAGGACGAATCGGCCACACAGATCAGGAGTGAATATGAAGCAAAAGTTGCTGCTAAGAAGATCTTTCAGAACGTGGCTAGACATGGTTCCAAATACATCTACCTAGAGGACTTGATGCGTTTCATGCCAGAAGATGAAGCTTCAAAATCCATGAGTCTCTTTGAAGGAGCATCTGAAAGCAGGAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACCTTGAACGATACTAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTCTGGTTTCTGTTATTATTCTGGTTATTTGGCTACTGATTCTTGGTATAGCCACCAGCAAGTTTCTCCTATTTGTCACCTCTCAACTTGTCCTAGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTATTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTTGGCGACCGATGCGAGATTGATGGTGTGCAGATGATCGTAGAAGAAATGAATATTCTGACAACCATTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGCGTTCTTGCAACCAAGGCCATCCACAACTACTACCGCAGCCCCGACATGGGCGATGCTGTTGAATTTTGTCTTCACATATCTACTCCGCCTGAGAAAATTGCTCTCATGAGACAGAGAATAGTAAGTTACATCGAGGGCAAGAAGGAGCATTGGTGCCCTGCGCCAATGATTATCCTCAAGGACGTAGAAGAGTTGAATAGGATGAGAATAGCCATATGGCCTACTCATAGAATGAACCATCAAGACATGGGAGAGAGGTGGGCAAGGAGAGCCCTTTTGGTTGAAGAACTGGTTAAAATTTTCCAAGAGCTCGACCTTCAATACCGTCTGCTACCGCTCGATATCAATGTCCGTTCCTTGCCTCCCGTGAACTCTACAAGGCTTCCAGCTACTTGGACAGCCCCTGCAAGTTGA | 2808 | 44.84 | MDFAIKSFKSHGSYKYVRKLSGTDAAQDQEQLPILSDQESDNHHRKQSVMDASDRREVVVKIDRADASSNVSSRAVESVNSSGRIWRESSYDFWNDSDGRRNNGEGANGDGRSEDFEFRQHRKDVEDPPSKLIGQFLHKQKASGEMSLDMDLEMLELPLDKTLSPVAESPLRRNSRELKVSFESISEISENDSMRRRHRDSPADEEHRAGQQPQQRDRRAYGNGHDDGGAEVVRCTSNSSFQRNVSFQRKSSLLRAKTKSRLLDPPEQPDRRSGRVPRSGQMRSGLLSKPLDEEEDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALVCTLTIPYWSKKNLWKLRLWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWKLLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFPTTKGGRVIGSGGLQKSPRGRSAKLSRALSKNGDEGITIDHLHKLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEDESATQIRSEYEAKVAAKKIFQNVARHGSKYIYLEDLMRFMPEDEASKSMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIIFPNSVLATKAIHNYYRSPDMGDAVEFCLHISTPPEKIALMRQRIVSYIEGKKEHWCPAPMIILKDVEELNRMRIAIWPTHRMNHQDMGERWARRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTRLPATWTAPAS | 935 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 38358597 | 38362316 | - | Lag0009345.1 | Lac9g1858 | 620784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g1858 | 935 | MobiDBLite | consensus disorder prediction | 92 | 131 | - | - | |
Lac9g1858 | 935 | MobiDBLite | consensus disorder prediction | 37 | 57 | - | - | |
Lac9g1858 | 935 | Coils | Coil | 490 | 513 | - | - | |
Lac9g1858 | 935 | MobiDBLite | consensus disorder prediction | 189 | 225 | - | - | |
Lac9g1858 | 935 | MobiDBLite | consensus disorder prediction | 92 | 129 | - | - | |
Lac9g1858 | 935 | MobiDBLite | consensus disorder prediction | 23 | 57 | - | - | |
Lac9g1858 | 935 | MobiDBLite | consensus disorder prediction | 258 | 297 | - | - | |
Lac9g1858 | 935 | Gene3D | - | 759 | 808 | IPR023408 | - | |
Lac9g1858 | 935 | PIRSF | Memb_At2g17000 | 40 | 935 | IPR016688 | - | |
Lac9g1858 | 935 | MobiDBLite | consensus disorder prediction | 189 | 232 | - | - | |
Lac9g1858 | 935 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 38 | 931 | IPR016688 | GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER) | |
Lac9g1858 | 935 | FunFam | Predicted mechanosensitive ion channel | 759 | 808 | - | - | |
Lac9g1858 | 935 | MobiDBLite | consensus disorder prediction | 260 | 277 | - | - | |
Lac9g1858 | 935 | SUPERFAMILY | Sm-like ribonucleoproteins | 749 | 808 | IPR010920 | - | |
Lac9g1858 | 935 | Pfam | Mechanosensitive ion channel, beta-domain | 752 | 809 | IPR006685 | GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g1978 | Lac-Chr12:36681796 | Lac9g1858 | Lac-Chr9:38358597 | 1.50E-128 | dispersed | |
Lac2g0114 | Lac-Chr2:874236 | Lac9g1858 | Lac-Chr9:38358597 | 3.90E-165 | dispersed | |
Lac2g0488 | Lac-Chr2:3556662 | Lac9g1858 | Lac-Chr9:38358597 | 3.60E-132 | dispersed | |
Lac4g1220 | Lac-Chr4:29814812 | Lac9g1858 | Lac-Chr9:38358597 | 0.00E+00 | dispersed | |
Lac9g1858 | Lac-Chr9:38358597 | Lac3g1066 | Lac-Chr3:8737565 | 8.30E-150 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g1858 | K22048 | - | csv:101210264 | 1550.03 |