Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1858 ATGGATTTCGCCATCAAGTCCTTCAAATCCCACGGCTCTTACAAGTATGTGAGGAAGCTTTCTGGAACAGACGCTGCTCAGGATCAAGAACAGCTTCCCATTCTTTCAGATCAGGAGTCGGATAATCATCACCGGAAACAGTCCGTTATGGATGCGTCTGACCGGAGAGAGGTCGTAGTCAAGATCGATCGGGCAGATGCTTCCAGTAATGTATCGTCGAGAGCGGTGGAGTCGGTGAACTCCAGTGGGAGGATTTGGCGGGAGTCGAGCTATGATTTCTGGAATGATAGTGATGGTAGACGGAATAATGGTGAAGGTGCTAATGGCGATGGCAGGAGTGAGGATTTTGAGTTTAGGCAACATAGGAAGGATGTGGAAGATCCGCCTTCGAAGCTTATTGGGCAGTTTCTGCACAAGCAGAAGGCGTCCGGAGAGATGTCGTTGGATATGGATTTGGAGATGTTGGAACTACCACTTGATAAGACTCTGTCTCCGGTGGCGGAATCTCCGTTGCGACGGAACTCCAGAGAGTTGAAGGTCTCGTTCGAGTCTATTTCAGAGATTTCTGAAAATGATTCGATGCGAAGACGGCATAGAGACTCGCCGGCTGATGAAGAACATAGAGCAGGACAGCAACCGCAGCAGCGTGATCGTCGAGCGTACGGCAATGGTCATGATGATGGTGGTGCTGAGGTGGTGAGATGCACGTCTAATTCGTCGTTTCAGAGAAACGTATCGTTCCAGAGGAAATCCAGCTTGCTTAGAGCTAAAACTAAGTCTAGACTGCTGGACCCGCCTGAACAGCCGGATCGGAGGTCAGGGCGAGTACCAAGATCAGGGCAAATGCGCTCCGGTTTGTTGTCAAAACCCTTGGATGAAGAAGAAGACGATCCATTCTTGGAGGAAGATCTTCCAGATGAGTATAAGAAGGCTAATCTTGGTGTTCTGACTTTGTTACAATGGGCGAGTTTAATTTTGATAATCGCGGCATTGGTATGCACTCTTACGATCCCTTACTGGAGTAAAAAGAATCTATGGAAACTTAGGTTATGGAAGTGGGAGGTTATGATTCTAGTTTTGATATGTGGAAGGCTAGTTTCAGGGTGGGGGATAAGGATAATCGTCTTCTTCATTGAGAGAAACTTTCTACTGCGTAAAAGGGTTCTATACTTTGTTTATGGGGTTAGAAAGGCAGTTCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAAATTATTGTTCGATGACAAAGTTCAAAGAGAAGTCAAAAGCAATGCCCTCGAATATGTGACTAAAGTTCTTGTATGCCTTCTTGTAAGCACTTTGGTTTGGTTGGTGAAAACTTTGATGGTGAAGGTTCTGGCCTCTTCTTTTCATGTGAGTACATATTTCGATAGGATTCAGGATGCACTATTTAACCAATATGTAATTGAGACACTGTCAGGACCGCCATTGATAGAGATTCAAAAGAACGAGGAAGAAGAAGAGAGGCTTGCAGAAGAGGTTATTAAATTACAGAATGCAGGGGCCACCATCCCTCCTGATCTAAAGGCAACTGCCTTTCCAACTACAAAGGGTGGACGAGTGATTGGGAGTGGAGGACTACAGAAAAGCCCTCGTGGAAGAAGTGCCAAGCTCTCACGGGCGCTTTCCAAAAATGGCGACGAGGGTATAACAATTGATCATTTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAACATTGTTCGACATGGAGCTCTTTCAACTTTGGATGAACAAATAAAGGATTCAACTCACGAGGACGAATCGGCCACACAGATCAGGAGTGAATATGAAGCAAAAGTTGCTGCTAAGAAGATCTTTCAGAACGTGGCTAGACATGGTTCCAAATACATCTACCTAGAGGACTTGATGCGTTTCATGCCAGAAGATGAAGCTTCAAAATCCATGAGTCTCTTTGAAGGAGCATCTGAAAGCAGGAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACCTTGAACGATACTAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTCTGGTTTCTGTTATTATTCTGGTTATTTGGCTACTGATTCTTGGTATAGCCACCAGCAAGTTTCTCCTATTTGTCACCTCTCAACTTGTCCTAGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTATTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTTGGCGACCGATGCGAGATTGATGGTGTGCAGATGATCGTAGAAGAAATGAATATTCTGACAACCATTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGCGTTCTTGCAACCAAGGCCATCCACAACTACTACCGCAGCCCCGACATGGGCGATGCTGTTGAATTTTGTCTTCACATATCTACTCCGCCTGAGAAAATTGCTCTCATGAGACAGAGAATAGTAAGTTACATCGAGGGCAAGAAGGAGCATTGGTGCCCTGCGCCAATGATTATCCTCAAGGACGTAGAAGAGTTGAATAGGATGAGAATAGCCATATGGCCTACTCATAGAATGAACCATCAAGACATGGGAGAGAGGTGGGCAAGGAGAGCCCTTTTGGTTGAAGAACTGGTTAAAATTTTCCAAGAGCTCGACCTTCAATACCGTCTGCTACCGCTCGATATCAATGTCCGTTCCTTGCCTCCCGTGAACTCTACAAGGCTTCCAGCTACTTGGACAGCCCCTGCAAGTTGA 2808 44.84 MDFAIKSFKSHGSYKYVRKLSGTDAAQDQEQLPILSDQESDNHHRKQSVMDASDRREVVVKIDRADASSNVSSRAVESVNSSGRIWRESSYDFWNDSDGRRNNGEGANGDGRSEDFEFRQHRKDVEDPPSKLIGQFLHKQKASGEMSLDMDLEMLELPLDKTLSPVAESPLRRNSRELKVSFESISEISENDSMRRRHRDSPADEEHRAGQQPQQRDRRAYGNGHDDGGAEVVRCTSNSSFQRNVSFQRKSSLLRAKTKSRLLDPPEQPDRRSGRVPRSGQMRSGLLSKPLDEEEDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALVCTLTIPYWSKKNLWKLRLWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWKLLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFPTTKGGRVIGSGGLQKSPRGRSAKLSRALSKNGDEGITIDHLHKLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEDESATQIRSEYEAKVAAKKIFQNVARHGSKYIYLEDLMRFMPEDEASKSMSLFEGASESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIIFPNSVLATKAIHNYYRSPDMGDAVEFCLHISTPPEKIALMRQRIVSYIEGKKEHWCPAPMIILKDVEELNRMRIAIWPTHRMNHQDMGERWARRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTRLPATWTAPAS 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38358597 38362316 - Lag0009345.1 Lac9g1858 620784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1858 935 MobiDBLite consensus disorder prediction 92 131 - -
Lac9g1858 935 MobiDBLite consensus disorder prediction 37 57 - -
Lac9g1858 935 Coils Coil 490 513 - -
Lac9g1858 935 MobiDBLite consensus disorder prediction 189 225 - -
Lac9g1858 935 MobiDBLite consensus disorder prediction 92 129 - -
Lac9g1858 935 MobiDBLite consensus disorder prediction 23 57 - -
Lac9g1858 935 MobiDBLite consensus disorder prediction 258 297 - -
Lac9g1858 935 Gene3D - 759 808 IPR023408 -
Lac9g1858 935 PIRSF Memb_At2g17000 40 935 IPR016688 -
Lac9g1858 935 MobiDBLite consensus disorder prediction 189 232 - -
Lac9g1858 935 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 38 931 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Lac9g1858 935 FunFam Predicted mechanosensitive ion channel 759 808 - -
Lac9g1858 935 MobiDBLite consensus disorder prediction 260 277 - -
Lac9g1858 935 SUPERFAMILY Sm-like ribonucleoproteins 749 808 IPR010920 -
Lac9g1858 935 Pfam Mechanosensitive ion channel, beta-domain 752 809 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1978 Lac-Chr12:36681796 Lac9g1858 Lac-Chr9:38358597 1.50E-128 dispersed
Lac2g0114 Lac-Chr2:874236 Lac9g1858 Lac-Chr9:38358597 3.90E-165 dispersed
Lac2g0488 Lac-Chr2:3556662 Lac9g1858 Lac-Chr9:38358597 3.60E-132 dispersed
Lac4g1220 Lac-Chr4:29814812 Lac9g1858 Lac-Chr9:38358597 0.00E+00 dispersed
Lac9g1858 Lac-Chr9:38358597 Lac3g1066 Lac-Chr3:8737565 8.30E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1858 K22048 - csv:101210264 1550.03