Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1894 ATGGAGAGACAATTTGGAGCGAGAGTGACAGGAATTAACGGTTTTAGTCCATGTTCATCGATTTCCAACGGGGCTCGAGATGAAAACGGAGACGTGGTTAAGGATTTGACCGAAGCGAACGAATTAATCGAGGCCATTGGGGGTTTTTCTGGGTTTCGCAAGACGCAATCGAAGGAGTGTTTGAATTTGGTTAGAAGATTGAAGATGCTCGTGCCGTTGCTGGAGGAGATTCGGGACCTTCATGATATGGTTCCTGCTGAGGATTTGAGTAGCCATCTTGGTCTTTTGAAGGAGGCTCTTGTATTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTATCTGGCTTTTGAGAATGAGGCTGTGATGGCGAGGTTTCATGCTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATGCCTTATGATGAGCTTGGAGTCTCAGAAGAATTGAAAGAGCAAGTTGAGCTCATGTCTACGCAACTCAAAAGAGCAAAATGTCGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGATTGTATTTTCTAAAAACGATGAGAGAAATGCTGACCCTGTTATACTCGAAAGATTGGCAAATAAATTGGAACTACGTAAAATTGCAGACTTGGAAGCAGAGACCGAAGCTGTTCAGAAATTAGTTAGACGTAGAGGTGTAACGAATTCTGATAGCCTCCAGCAAATTTTAGACCTTCTGTGCAAGTTTAAACAAATTGCAGGTATGGACACTAAATTTGCTCTTGATGGTCCTGTTACATCGAAATGTCTGCAACGTTCTCGGTCTACAGTAATCCCTCATGAATTCCTCTGTCCAATTACCTTGGAAATCATGACAGATCCTGTCATTGTGGCAACTGGGCAGACTTATGACCGAGAAAGTATACAGAAGTGGTTGAATTCTAATCACCGAACCTGCCCCAAAACTGGACAAACCCTGATGCATTTGTCACTAGCTCCAAATTATGCTCTCAAGAACCTCATTTTGCAGTGGTGTCAGAATAATGCCTATGAATTACCCAAAAAGGAAGCAGTTGCTGGATTGGGTGGCACGCCGCCCGAACTCGCTCAGGAAATCTCCTCTTTGGTCCACGATCTATCATCAAGGCAGTTGGACGTCCAAAGAGAAGCTATCATCAAGATCCGGGTCCTCTCCAAGGAGAACCCCGAGAACAGAGTTTGGATCGCGAATAGCGGAGTCATCCCTCCATTGGTTAAGCTTCTCTCCTACCCAGATCCCAATTTCCAAGAACACACCGTGACCGCCCTTTTGAACTTGTCTATCGACGAAGCAAATAAAAGACTCATAGCCAGAGAAGGAGCCATCCCTGCTATCATAGAGATCCTGCAGCAAGGAACAGAGGAGGCTAAGGAGAACTCTGCTGCCGCATTGTTTAGCTTGTCAATGTTAGATGAAAATAAGGTTCTTATCGGAACTCTAAAGGGAATCCCGCCATTAGTAGCTCTTCTTCGAGACGGTACAATCCGAGGAAAGAAGGATGCTGCCACTGCACTCTTTAACCTGTCACTAAATCAAGCAAACAAGTCCCGAGCCATCAAAGCCGGCATCGTACCGCCCCTTCTCTATTTACTTCAGGATAAGAGCTTAGGAATGATTGATGAAGCTTTATCAATCTTGTTACTCCTCACATCACATCCCGAGGGACGGGCCGAGATCAGTAATAACTCCTTCATCGGAATTCTAGTGAACATCATAAGAGACGGGACTCCGAAGAACAAGGAATGTGCTACATCCTTGCTCCTAGAGCTTGGACTAAACAATCCACCTTCCATCTTGGTTGCACTGCAATTTGGTGTATATGAACATCTGATAGAGGTCACAAGATGTGGGACAAGTAGAGCACAGAGAAAAGCAAACTCACTTTTGCAGTATATGATCAAGTGTGAACACATTCCCTGA 1953 44.55 MERQFGARVTGINGFSPCSSISNGARDENGDVVKDLTEANELIEAIGGFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMVPAEDLSSHLGLLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHAVYDKLKEALDGMPYDELGVSEELKEQVELMSTQLKRAKCRKDTQDMELAMDMMIVFSKNDERNADPVILERLANKLELRKIADLEAETEAVQKLVRRRGVTNSDSLQQILDLLCKFKQIAGMDTKFALDGPVTSKCLQRSRSTVIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKTGQTLMHLSLAPNYALKNLILQWCQNNAYELPKKEAVAGLGGTPPELAQEISSLVHDLSSRQLDVQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDPNFQEHTVTALLNLSIDEANKRLIAREGAIPAIIEILQQGTEEAKENSAAALFSLSMLDENKVLIGTLKGIPPLVALLRDGTIRGKKDAATALFNLSLNQANKSRAIKAGIVPPLLYLLQDKSLGMIDEALSILLLLTSHPEGRAEISNNSFIGILVNIIRDGTPKNKECATSLLLELGLNNPPSILVALQFGVYEHLIEVTRCGTSRAQRKANSLLQYMIKCEHIP 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38710060 38713650 + Lag0009381.1 Lac9g1894 620820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1894 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 350 IPR013083 -
Lac9g1894 650 Gene3D - 354 649 IPR011989 -
Lac9g1894 650 FunFam RING-type E3 ubiquitin transferase 30 146 - -
Lac9g1894 650 FunFam RING-type E3 ubiquitin transferase 273 348 - -
Lac9g1894 650 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac9g1894 650 Coils Coil 151 171 - -
Lac9g1894 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 451 493 IPR000225 GO:0005515(InterPro)
Lac9g1894 650 SUPERFAMILY ARM repeat 370 644 IPR016024 -
Lac9g1894 650 CDD RING-Ubox_PUB 277 329 IPR045210 -
Lac9g1894 650 CDD MLKL_NTD 58 166 - -
Lac9g1894 650 PANTHER U BOX DOMAIN-CONTAINING 54 643 - -
Lac9g1894 650 Pfam U-box domain 276 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac9g1894 650 SUPERFAMILY RING/U-box 274 350 - -
Lac9g1894 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 492 534 IPR000225 GO:0005515(InterPro)
Lac9g1894 650 SMART Ubox_2 279 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac9g1894 650 Pfam Armadillo/beta-catenin-like repeat 482 520 IPR000225 GO:0005515(InterPro)
Lac9g1894 650 Pfam Armadillo/beta-catenin-like repeat 399 438 IPR000225 GO:0005515(InterPro)
Lac9g1894 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515(InterPro)
Lac9g1894 650 SMART arm_5 481 521 IPR000225 GO:0005515(InterPro)
Lac9g1894 650 SMART arm_5 399 439 IPR000225 GO:0005515(InterPro)
Lac9g1894 650 SMART arm_5 522 562 IPR000225 GO:0005515(InterPro)
Lac9g1894 650 SMART arm_5 440 480 IPR000225 GO:0005515(InterPro)
Lac9g1894 650 FunFam RING-type E3 ubiquitin transferase 360 649 - -
Lac9g1894 650 Gene3D - 31 144 IPR036537 GO:0007166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0084 Lac-Chr6:734020 Lac9g1894 Lac-Chr9:38710060 6.70E-13 dispersed
Lac8g1555 Lac-Chr8:33211156 Lac9g1894 Lac-Chr9:38710060 2.40E-39 dispersed
Lac9g1195 Lac-Chr9:27883910 Lac9g1894 Lac-Chr9:38710060 3.30E-25 dispersed
Lac9g1894 Lac-Chr9:38710060 Lac9g2481 Lac-Chr9:43655656 2.50E-68 dispersed
Lac9g1894 Lac-Chr9:38710060 Lac7g2706 Lac-Chr7:46146918 3.80E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1894 - - - 0.0