Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1924 ATGGAGGACCAGCGAGGTATCAGCAGCAATAAGCCTACAGACAAATGGATGGCATTTGACAGAGAATCAAACACGACAAACAGCCCTGGAAATGAAGCAAAAGAAGATAGAGAAAGCCGGCAATCTTCTTCCAAAAGGGCAATATCAACAGAAGCAAACATAGCAGAAAGGGCGGCGGAGTGGGGACTGGTGGTGGAGACAGACGTGGAAGAAGGCAGTTTCAAGGCCATAGTGGGGAGAGCATCAGGGGAAGGAGGGGGCAGCAAAAGGTCATCAGAGAAAATCAGTGGCACAGGAAGAACTTCAAGCTTTAGCAATGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTAGCCTCTTTGGAACAGACATTCGTTGTCTCTGATGCCACTAAACCAGACTGCCCCATCGTGTATGCGAGCAGTGGGTTCTTTGGCATGACTGGTTATGCTTCAGAGGAGGTCATTGGAAGGAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGATAAAATTCGATCTGCAGTGAAGCAAGGCAAAAGCTACTGCGGGAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACGCCTATCAAGGATGACAATGGCAAGACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCGTAAATGAAAGAGCATTACGGCCGAACGGGTTGCCAAAGTCATTAATCCGCTATGACGCTCGCCAAAAGGAAAAGGCAATGGGTTCCATCACAGAGGTTGTCCAGACTGTGAAGAATCCTCGATCTCATAATCGAGCTATCAGTCATGACATTAACAGGAAAAAAGAAGAGTTGGAGAAGTTCAATCTTGATTATGTTCTTCCAAAGTCAGCTGAAGCTGCAAATGATACACCGGGTAGACAAACTCCTCAACAGGACCTTAGAGATGATGGCTTAGGCAAGAAACCTAGGTTATCAAGTCGAGTTTCTTTAATGGGGTTCAAAGGGAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGTAACAGCCCTTGAACCAGAAATTTTGATGACCGATGAAATAGAGCGGACTGATAGTTGGGACCGTGCTGAAAGAGAAAGGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGCGCATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCTTCTGATAGCTTTCTTGAGTTGACAGAATATACACGTGAAGAAATTTTGGGCCGAAACTGCCGGTTTCTTCAAGGACCTGAAACAGATCAAGAAACTGTCTCAAAGATAAGGGATGCAATTAGGGAACAAAGAGAAATAACCGTTCAGTTGATCAACTATACCAAGACTGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCGATGCGTGATGAAATGGGAGAGCTTCAGTATTTTATTGGTGTACAACTCGATGGAAGTGGTCATGTGGAACCTTTGCAAAACCGCCTTTCTGAGACGGCAGAGCAACAAAGTGCCATGCTGGTTAAAGCTACTGCAGAGAATGTTGATGAGGCTGTCCGGGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAACATAGTTCTTCTTGGACGGCTATACAAAAGATTATTCGACGTGGTGAAAAAATTGGACTCCAACATTTTAAGCCTATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGCGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTGTTGAATCGGAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATTGCACTTCTGGATCATCCTTTTCTTCCAACACTGTACACTTCGTTCGAGACCCCTACACACGTTTGTTTGATAACAGACTTTTGCTCTGGTGGGGAATTATTCGCATTGCTTGATAAGCAGCCAATGAAAATGTTTAAAGAGGATTCTGCGAGGTTCTATGCTGCAGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTATCGAGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCATGTTACACTTGCTGACTTCGATTTATCACTTATGACATCCTGCAAACCACAGATTGTAAAGTATCCATTGCCTCACGGTAGAAGGAGATCTCGAAGTCAACCACCGCCAGTATTTGTTGCTGAGCCAATTACGCAATCAAATTCATTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTGTTGTATGAGATGCTTTATGGTCGCACGCCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGGCAACATCTTGCACAAAGATCTCACTTTCCCAAGTAGCATTCAGGTAAGTCTTGCAGCAAGGCAGTTGATCAATGCATTGCTTCAAAGAGATCCCGCCCGACGTTTAGGATCAAGCACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAGTCAATCAACTGGCCGCTGATCCGGTGTATGGTCCCACCACCATTAGAATCACCTCTTCACCTTACTGGGAAAGATGAAACGGCCAAGAACGTCAACTGGGAAGATGATGGCGTGCTTAGCGCAATGGATATGGATTTTTTCTGA 2772 44.26 MEDQRGISSNKPTDKWMAFDRESNTTNSPGNEAKEDRESRQSSSKRAISTEANIAERAAEWGLVVETDVEEGSFKAIVGRASGEGGGSKRSSEKISGTGRTSSFSNESSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGPETDQKEVDKIRSAVKQGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGKTIKFIGMQVEVSKYTEGVNERALRPNGLPKSLIRYDARQKEKAMGSITEVVQTVKNPRSHNRAISHDINRKKEELEKFNLDYVLPKSAEAANDTPGRQTPQQDLRDDGLGKKPRLSSRVSLMGFKGKSLSSSRKLEVTALEPEILMTDEIERTDSWDRAERERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDEMGELQYFIGVQLDGSGHVEPLQNRLSETAEQQSAMLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKHSSSWTAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCSGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLMTSCKPQIVKYPLPHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLHLTGKDETAKNVNWEDDGVLSAMDMDFF 923
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 39021580 39035048 - Lag0009411.1 Lac9g1924 620850
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1924 923 MobiDBLite consensus disorder prediction 308 334 - -
Lac9g1924 923 ProSiteProfiles PAS repeat profile. 387 460 IPR000014 -
Lac9g1924 923 ProSiteProfiles Protein kinase domain profile. 588 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g1924 923 Gene3D Phosphorylase Kinase; domain 1 587 671 - -
Lac9g1924 923 SUPERFAMILY Protein kinase-like (PK-like) 564 898 IPR011009 -
Lac9g1924 923 FunFam LOV domain-containing protein 376 540 - -
Lac9g1924 923 SUPERFAMILY PYP-like sensor domain (PAS domain) 136 228 IPR035965 -
Lac9g1924 923 ProSiteProfiles PAC domain profile. 461 515 IPR000700 -
Lac9g1924 923 CDD PAS 402 502 IPR000014 -
Lac9g1924 923 FunFam Putative LOV domain-containing protein 672 887 - -
Lac9g1924 923 SUPERFAMILY PYP-like sensor domain (PAS domain) 403 502 IPR035965 -
Lac9g1924 923 Gene3D PAS domain 129 300 - -
Lac9g1924 923 MobiDBLite consensus disorder prediction 89 110 - -
Lac9g1924 923 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g1924 923 NCBIfam PAS domain S-box protein 412 502 IPR000014 -
Lac9g1924 923 NCBIfam PAS domain S-box protein 141 232 IPR000014 -
Lac9g1924 923 ProSitePatterns Protein kinases ATP-binding region signature. 594 617 IPR017441 GO:0005524(InterPro)
Lac9g1924 923 MobiDBLite consensus disorder prediction 79 110 - -
Lac9g1924 923 SMART serkin_6 588 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g1924 923 Gene3D Transferase(Phosphotransferase) domain 1 672 892 - -
Lac9g1924 923 ProSiteProfiles PAC domain profile. 189 243 IPR000700 -
Lac9g1924 923 SMART pas_2 389 458 IPR000014 -
Lac9g1924 923 SMART pas_2 117 186 IPR000014 -
Lac9g1924 923 FunFam LOV domain-containing protein 587 671 - -
Lac9g1924 923 FunFam Putative LOV domain-containing protein 129 285 - -
Lac9g1924 923 CDD PAS 142 231 IPR000014 -
Lac9g1924 923 ProSiteProfiles PAS repeat profile. 115 188 IPR000014 -
Lac9g1924 923 Pfam Protein kinase domain 591 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g1924 923 PANTHER FLIPPASE KINASE 1-RELATED 543 896 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac9g1924 923 CDD STKc_phototropin_like 586 894 - -
Lac9g1924 923 Gene3D PAS domain 376 540 - -
Lac9g1924 923 Pfam PAS domain 136 232 IPR000014 -
Lac9g1924 923 Pfam PAS domain 410 502 IPR000014 -
Lac9g1924 923 MobiDBLite consensus disorder prediction 1 52 - -
Lac9g1924 923 SMART pac_2 464 506 IPR001610 -
Lac9g1924 923 SMART pac_2 192 234 IPR001610 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac9g1924 Lac-Chr9:39021580 Lac9g2687 Lac-Chr9:45166135 9.20E-93 dispersed
Lac13g0280 Lac-Chr13:2008006 Lac9g1924 Lac-Chr9:39021580 2.80E-54 transposed
Lac13g0648 Lac-Chr13:4886706 Lac9g1924 Lac-Chr9:39021580 1.10E-47 transposed
Lac6g2319 Lac-Chr6:40618035 Lac9g1924 Lac-Chr9:39021580 3.40E-19 transposed
Lac9g2534 Lac-Chr9:43988050 Lac9g1924 Lac-Chr9:39021580 0.00E+00 transposed
Lac1g3129 Lac-Chr1:51633641 Lac9g1924 Lac-Chr9:39021580 1.90E-94 wgd
Lac12g0426 Lac-Chr12:4741509 Lac9g1924 Lac-Chr9:39021580 8.00E-283 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86439 PF00069 Pkinase 9.10E-62 CL0016 Lac PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1924 K20715 - csv:101215355 1714.12