Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g1936 | ATGGATGGATTTAGGGGTAACGACAACAGGCAAGGCGTTGAAAGGCATTCCCACGCCGAGATGGGATCATTAGGCGACAAAACCATACTGGAATTTGAAGATGAGAGCCTTGTTAGTCCTGTATCATTAAATAGAAAGAATTTTTCCATTGAGGGATCTTTACATTCTTCTTCATTGGCTGGTGGTTCCCAAAAATTCTGTTACAGTATCATGAAGAACAGGGTACTTGGCAGCATTAAGATTGTCGTCTTCTCTGCTAAAATCAACTTGCTGATGCCTTTTGGGCCTTTAGCAATATTAGTCAGCAATTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCCTGTTGGGGATCATACCCCTTGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTTTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGCGAAGAGGAATGATACGTGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCTAATATGTTATTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAGTTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGCAAGGCATCTGCTACTGTGAATTCTGGATTGCTGTTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACATACAGAGTTGCACTCTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCTGCATTATGTTGGTGGCATATGCAGCCTATCTTGTTTTTCAATTGAAAAGCGATAGGAACTTATATCTCCCAGTTGATGAGGTGGATAATGAAGGGAATTCTGATGATGAAGAAGATCCTGAGATTTCCATGTGGGAATCCATTGTTTGGCTGTCTATCTTGACCATTTGGATCTCCGTCCTCTCCGAATACTTAGTTAATGCAATAGAGGGGGCATCGGTTGCCATGAACATACCAGTAGCATTCATTAGTGTTATCCTACTGCCAATTGTTGGGAATGCTGCAGAACATGCTGGTGCCATCATGTTTGCCATGAAAGACAAGCTAGACATTTCGTTGGGAGTTGCAATAGGATCATCTACACAGATATCTATGTTCGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGTTGCCCTATGGACTTGAATTTTCAACTTTTTGAGACCGCCACGCTATTCATCACGGTTATTGTTGTGGCCTTCATGTTGCAGGATGGAACTTCTAATTACCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCAAGTTTCTTTGTACATATTGATCCAGCCTTAGTTGGCAAGGGACGACTCGGAGTGGTGAATCTGCCTGCAGAGGGGCCTCTTCAACCTAGTACTCTTCTAAAGATGGGATCGACCGAAGCTCGAGGTTCACTCCATTGCTGTATAGTTCTGAACTCGGGCTCTACCATGTTCAGAAAGCATTTTTCCATGTTGTTTTGTGACAATCAATGGCAATAG | 1527 | 42.7 | MDGFRGNDNRQGVERHSHAEMGSLGDKTILEFEDESLVSPVSLNRKNFSIEGSLHSSSLAGGSQKFCYSIMKNRVLGSIKIVVFSAKINLLMPFGPLAILVSNLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFSKASATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSCIMLVAYAAYLVFQLKSDRNLYLPVDEVDNEGNSDDEEDPEISMWESIVWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPALVGKGRLGVVNLPAEGPLQPSTLLKMGSTEARGSLHCCIVLNSGSTMFRKHFSMLFCDNQWQ | 508 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 39140096 | 39145845 | - | Lag0009423.1 | Lac9g1936 | 620862 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g1936 | 508 | NCBIfam | calcium/proton exchanger | 92 | 440 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
| Lac9g1936 | 508 | FunFam | Vacuolar cation/proton exchanger | 285 | 441 | - | - | |
| Lac9g1936 | 508 | FunFam | Vacuolar cation/proton exchanger | 139 | 278 | - | - | |
| Lac9g1936 | 508 | Gene3D | - | 138 | 281 | IPR044880 | - | |
| Lac9g1936 | 508 | Gene3D | - | 282 | 441 | IPR044880 | - | |
| Lac9g1936 | 508 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 61 | 445 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
| Lac9g1936 | 508 | Pfam | Sodium/calcium exchanger protein | 297 | 439 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac9g1936 | 508 | Pfam | Sodium/calcium exchanger protein | 109 | 265 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g2500 | Lac-Chr12:41995758 | Lac9g1936 | Lac-Chr9:39140096 | 3.00E-160 | dispersed | |
| Lac5g0759 | Lac-Chr5:9927454 | Lac9g1936 | Lac-Chr9:39140096 | 9.90E-164 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac9g1936 | K07300 | - | csv:101215915 | 816.994 |