Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g1940 | ATGGTTCACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCATGTGATCGTAATGTCCACTCAGCGAACGCCTTGTCAAGGCGCCATACAAGAACGCTCTTGTGTGAAAGATGCCATTTGCAACCTGCCACAGTAAGATGTATTGAAGAGAGGCTTTCTCTGTGTCATAATTGTGACTGGACAGTTCATGGCACATCTACCTCTGCTCCATCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCAATCTGGTCTTTTGTTTTGGATGTGCCCTCTGTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACCGACTTGACGGGTGCCTGGAGCCCTTCGGAGAACGACGACAGTCAAAGAATGCCTGGTGTTTGCAGCAGGGAAAAGTCAAATGTTTTGGTTGGATCATCTTCACTTACTGATTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGCTAATATGTCTTCACCCAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGCGGTGATGATGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAGCTATTTGGTATGAGCCTTAATCATTCTGAAGAACTTTTCGAGAACGGTGGAATTGATAGCCTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGGTCTTCCGTTGGAGTTGTCAAACCCATGCAGCCAGCCTGCAGCAATGGTGCTTCTGCTGACTCAATGATGAGTACCAAAACCGAACCGATCCTCTGTTTTAGTTCAAGGCAAGCACAATCGGGTGTGTCATTTTCTGGCCTTACTGGCGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGAGAGCCTCCATGGTGTGCCCCTGGCACTGAAAGTTCATTCCCATCTTCTGATCGCAACAACGCCGTTCTACGTTACAAGGAGAAAAAGAAGACGCGCAAGTTTGAGAAAAGAGTGAGATATGCAACGCGCAAAGCGAGGGCTGATGTCAGAAGGCGTGTGAAGGGACGCTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCGCTGAACCAGACTAGAAGCTGCTGA | 1197 | 46.53 | MVHCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPATVRCIEERLSLCHNCDWTVHGTSTSAPSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDACEKELGLMSIAETDLTGAWSPSENDDSQRMPGVCSREKSNVLVGSSSLTDFGSRPHTSDQPVELANMSSPKFCCPGTKVAEFCGDDDDLYKEFDMDEMDLNLENYEELFGMSLNHSEELFENGGIDSLFEAKGLSFEDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSMMSTKTEPILCFSSRQAQSGVSFSGLTGESSAGDYQDCGASSMLLMGEPPWCAPGTESSFPSSDRNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQTRSC | 398 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 39196669 | 39199554 | + | Lag0009427.1 | Lac9g1940 | 620866 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g1940 | 398 | Pfam | CCT motif | 341 | 383 | IPR010402 | GO:0005515(InterPro) | |
| Lac9g1940 | 398 | ProSiteProfiles | CCT domain profile. | 341 | 383 | IPR010402 | GO:0005515(InterPro) | |
| Lac9g1940 | 398 | ProSiteProfiles | Zinc finger B-box type profile. | 30 | 78 | IPR000315 | GO:0008270(InterPro) | |
| Lac9g1940 | 398 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 10 | 1 | 388 | - | - | |
| Lac9g1940 | 398 | CDD | Bbox1_BBX-like | 34 | 78 | IPR049808 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g0796 | Lac-Chr10:6280750 | Lac9g1940 | Lac-Chr9:39196669 | 1.10E-08 | dispersed | |
| Lac13g0539 | Lac-Chr13:3946418 | Lac9g1940 | Lac-Chr9:39196669 | 3.40E-11 | dispersed | |
| Lac7g1303 | Lac-Chr7:12599608 | Lac9g1940 | Lac-Chr9:39196669 | 7.80E-14 | dispersed | |
| Lac8g2538 | Lac-Chr8:43156507 | Lac9g1940 | Lac-Chr9:39196669 | 2.10E-07 | dispersed | |
| Lac6g0573 | Lac-Chr6:4791925 | Lac9g1940 | Lac-Chr9:39196669 | 6.70E-09 | transposed | |
| Lac6g2346 | Lac-Chr6:41107724 | Lac9g1940 | Lac-Chr9:39196669 | 1.50E-09 | transposed | |
| Lac9g2075 | Lac-Chr9:40369862 | Lac9g1940 | Lac-Chr9:39196669 | 2.10E-58 | transposed | |
| Lac12g0415 | Lac-Chr12:4650408 | Lac9g1940 | Lac-Chr9:39196669 | 4.70E-121 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24440 | PF06203 | CCT | 2.40E-15 | CL0281 | Lac | TR |
Pathway information