Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1940 ATGGTTCACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCATGTGATCGTAATGTCCACTCAGCGAACGCCTTGTCAAGGCGCCATACAAGAACGCTCTTGTGTGAAAGATGCCATTTGCAACCTGCCACAGTAAGATGTATTGAAGAGAGGCTTTCTCTGTGTCATAATTGTGACTGGACAGTTCATGGCACATCTACCTCTGCTCCATCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCAATCTGGTCTTTTGTTTTGGATGTGCCCTCTGTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACCGACTTGACGGGTGCCTGGAGCCCTTCGGAGAACGACGACAGTCAAAGAATGCCTGGTGTTTGCAGCAGGGAAAAGTCAAATGTTTTGGTTGGATCATCTTCACTTACTGATTTTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGCTAATATGTCTTCACCCAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGCGGTGATGATGATGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGAGCTATTTGGTATGAGCCTTAATCATTCTGAAGAACTTTTCGAGAACGGTGGAATTGATAGCCTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGGTCTTCCGTTGGAGTTGTCAAACCCATGCAGCCAGCCTGCAGCAATGGTGCTTCTGCTGACTCAATGATGAGTACCAAAACCGAACCGATCCTCTGTTTTAGTTCAAGGCAAGCACAATCGGGTGTGTCATTTTCTGGCCTTACTGGCGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGAGAGCCTCCATGGTGTGCCCCTGGCACTGAAAGTTCATTCCCATCTTCTGATCGCAACAACGCCGTTCTACGTTACAAGGAGAAAAAGAAGACGCGCAAGTTTGAGAAAAGAGTGAGATATGCAACGCGCAAAGCGAGGGCTGATGTCAGAAGGCGTGTGAAGGGACGCTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCGCTGAACCAGACTAGAAGCTGCTGA 1197 46.53 MVHCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPATVRCIEERLSLCHNCDWTVHGTSTSAPSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDACEKELGLMSIAETDLTGAWSPSENDDSQRMPGVCSREKSNVLVGSSSLTDFGSRPHTSDQPVELANMSSPKFCCPGTKVAEFCGDDDDLYKEFDMDEMDLNLENYEELFGMSLNHSEELFENGGIDSLFEAKGLSFEDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSMMSTKTEPILCFSSRQAQSGVSFSGLTGESSAGDYQDCGASSMLLMGEPPWCAPGTESSFPSSDRNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQTRSC 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39196669 39199554 + Lag0009427.1 Lac9g1940 620866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1940 398 Pfam CCT motif 341 383 IPR010402 GO:0005515(InterPro)
Lac9g1940 398 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515(InterPro)
Lac9g1940 398 ProSiteProfiles Zinc finger B-box type profile. 30 78 IPR000315 GO:0008270(InterPro)
Lac9g1940 398 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 388 - -
Lac9g1940 398 CDD Bbox1_BBX-like 34 78 IPR049808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1940 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0796 Lac-Chr10:6280750 Lac9g1940 Lac-Chr9:39196669 1.10E-08 dispersed
Lac13g0539 Lac-Chr13:3946418 Lac9g1940 Lac-Chr9:39196669 3.40E-11 dispersed
Lac7g1303 Lac-Chr7:12599608 Lac9g1940 Lac-Chr9:39196669 7.80E-14 dispersed
Lac8g2538 Lac-Chr8:43156507 Lac9g1940 Lac-Chr9:39196669 2.10E-07 dispersed
Lac6g0573 Lac-Chr6:4791925 Lac9g1940 Lac-Chr9:39196669 6.70E-09 transposed
Lac6g2346 Lac-Chr6:41107724 Lac9g1940 Lac-Chr9:39196669 1.50E-09 transposed
Lac9g2075 Lac-Chr9:40369862 Lac9g1940 Lac-Chr9:39196669 2.10E-58 transposed
Lac12g0415 Lac-Chr12:4650408 Lac9g1940 Lac-Chr9:39196669 4.70E-121 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0573 . 1 339 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.2e-83 307.8
Lac3g0282 . 5 374 C2C2-CO-like Transcription Factor Family AT5G57660 51.1 8.2e-66 248.4
Lac9g1940 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 50.6 3.1e-92 336.3
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.6 2.0e-86 317.0
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 1.6e-83 307.4
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 1.6e-83 307.4
Lac4g1427 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 56.1 3.7e-52 203.0
Lac9g1735 . 15 216 C2C2-CO-like Transcription Factor Family AT1G75540 51.6 3.0e-46 183.3
Lac5g2128 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.6 6.4e-56 214.5
Lac1g2983 . 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 70.5 9.0e-50 194.1
Lac9g1749 . 1 197 C2C2-CO-like Transcription Factor Family AT2G21320 51.3 6.4e-48 188.0
Lac5g2128 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 9.5e-58 220.7
Lac9g1749 . 1 196 C2C2-CO-like Transcription Factor Family AT4G38960 55.1 1.3e-51 200.3
Lac1g2983 . 1 164 C2C2-CO-like Transcription Factor Family AT4G38960 59.8 6.2e-49 191.4
Lac4g1427 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.1 5.8e-55 211.8
Lac6g0470 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.7 2.0e-47 186.8
Lac9g1735 . 15 209 C2C2-CO-like Transcription Factor Family AT4G39070 54.2 1.8e-43 173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24440 PF06203 CCT 2.40E-15 CL0281 Lac TR