Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1941 ATGGCAGAGTGTGGCAGAAGAGACAGAAAGCTAACCATGGTTAGAGAACGTGGGTTAGTCTCCTTCAGAACCGGAGAGGTAGCTCATCCTGTTGATGATAATTCTCTCTTCTTCTCATCATTCCACGGCAAAAGCTTCACTGGTCTTGGTATGATCTCTTCTTTGCTTGCTCATCCTCACAATTTCGTCTGGATTCTTGATTGGGATTGTGATCTTGGTTTCATTTGCTGTTCTGGGTTCTTGGGATTTTTGGATTTTCTTTCTGAATTTGTAAGGAAGAGTTCTGGATTTGAATTTTGGGTGGATTTGAATTTGATCCGAGAAGGTTGGGGGTGGGGGGTTTTGGGAACTGGATTGATCCCTTTGCATCATTGGTGTTCTTCTGATGGGATTTTGATCACTTTCTCAAACATTCTGAATCGTTTCTGGGTAAATCTGTTGCCTCGAATCTTGATGTTGAACAATGGAAACTCTTGGAACTCTGTAGTGTGTGTGTGTGTGTGTGTGCTGATTGTTGGGTTAGTGGAAGATCAGAAGACTTTTTGTACTTGGATTAAAATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTGGGAGTGATCCTTGTAAATACAGCGCTATCAATTTCCATCTTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGTCACCTGCGTTACCATCGACACCAGATTCCATGGAGAATGCACCTGAATCCATAGAATTCCGTCTCAACCCTAATGGAAGTTACATTGAAGAGTTCCGTAGTCGCATCCCAGCAATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTCGAACACGACTGCTCAGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAACCATTTATCTTGCGGCCATCTTTTCCACAGGGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACATGCCCGCTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCTTCCTGCTTCTGCTACTTCCATTTCATCTTCCTCGTTGAAACTGCATCGCTAAACACCTGA 1068 44.85 MAECGRRDRKLTMVRERGLVSFRTGEVAHPVDDNSLFFSSFHGKSFTGLGMISSLLAHPHNFVWILDWDCDLGFICCSGFLGFLDFLSEFVRKSSGFEFWVDLNLIREGWGWGVLGTGLIPLHHWCSSDGILITFSNILNRFWVNLLPRILMLNNGNSWNSVVCVCVCVLIVGLVEDQKTFCTWIKMGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSPALPSTPDSMENAPESIEFRLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFCYFHFIFLVETASLNT 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39211618 39213574 + Lag0009428.1 Lac9g1941 620867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1941 355 Pfam Ring finger domain 283 326 IPR001841 -
Lac9g1941 355 SMART ring_2 284 325 IPR001841 -
Lac9g1941 355 ProSiteProfiles Zinc finger RING-type profile. 284 326 IPR001841 -
Lac9g1941 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 331 IPR013083 -
Lac9g1941 355 PANTHER - 187 336 IPR044249 -
Lac9g1941 355 SUPERFAMILY RING/U-box 273 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0413 Lac-Chr12:4625979 Lac9g1941 Lac-Chr9:39211618 7.00E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1941 K16285 - csv:101216645 310.457