Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1948 ATGGCGGATTCGGATAACGAGTCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGACGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTGCCAGCGAACGCGAAGATCTCAAAAGATGCGAAAGAAACGGTACAAGAGTGCGTGTCGGAGTTCATAAGCTTCATAACGGGAGAGGCGTCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTGGGATTCGAAGAGTATGTGGAACCGCTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGAAGACAAGGGGAGAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCTAATGGTGGTGGAGGAGTCAACCCTGGTACTGGTGGTGGTGCCGGCGGCGGCGGATATAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGGGCATCATCATCAGGGAGGTGTTTATGGCGGTGGAGGATTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG 621 55.88 MADSDNESGGHNSNANSELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGGGPGGSGANGGGGVNPGTGGGAGGGGYNGVGGMYGGMMMMGHHHQGGVYGGGGFHHMGIGGGKGGSGGSGTGHR 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39267621 39268241 - Lag0009435.1 Lac9g1948 620874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1948 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Lac9g1948 206 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g1948 206 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Lac9g1948 206 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Lac9g1948 206 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Lac9g1948 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 126 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lac9g1948 206 MobiDBLite consensus disorder prediction 114 146 - -
Lac9g1948 206 Gene3D Histone, subunit A 14 131 IPR009072 GO:0046982(InterPro)
Lac9g1948 206 FunFam Nuclear transcription factor Y subunit B-3 16 134 - -
Lac9g1948 206 MobiDBLite consensus disorder prediction 1 23 - -
Lac9g1948 206 MobiDBLite consensus disorder prediction 1 25 - -
Lac9g1948 206 SUPERFAMILY Histone-fold 24 127 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3050 Lac-Chr10:44991937 Lac9g1948 Lac-Chr9:39267621 4.60E-45 dispersed
Lac5g0795 Lac-Chr5:10703103 Lac9g1948 Lac-Chr9:39267621 6.50E-48 dispersed
Lac5g0828 Lac-Chr5:11509836 Lac9g1948 Lac-Chr9:39267621 2.40E-33 dispersed
Lac5g2027 Lac-Chr5:38716326 Lac9g1948 Lac-Chr9:39267621 2.50E-47 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24441 PF00808 CBFD_NFYB_HMF 2.00E-27 CL0012 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1948 K08065 - csv:101219076 254.218