Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g1967 | ATGTGGAGGGGTTGCTCTGGCGGAGCTGGGGTTTTTCTCAAGCTCTTGAGGTGCTTACTGAGGATGTCTTTGAGCTGCAAGTTTTCTACCTCTAATGGAAAATTTCCAGCTGGGTTTAAGCTGAAGAAGGCTAAGGAACATCTGTTTATAGTTTTGAGCAGTTGGTTTTCCTTGCGTTCGAATAATGTGAATAGTGGAACAAAACAGAAGACCTCGAACTTGTTCGATGAAGAAACTCGAACTTTGCTGCGGCATTTCAATGTAAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTTGTTGTCCGAATCAGATCGGATGTCATCCCTCGGGTGCACCAACGATTTTGGATCTGACACATCACAGTTGGATGGAATTGCCTGTGCCCTGAGGTTACTGTACTGGGAGCAAGATTTGCACAAGCAGTATGTATGGGTTGGAGAGAGTGCAGATTCCAATTTTGGGCAGTGTCCAATTCGAACTGAGAAGATCCCTGAAAATTCTGACCAATTATTCTCTGAGGACGTAACTGTTCCATTTGCTGCAGACTTATCCGTCTCTTTACTTTCTACTGGAAATCAGCTTTGTGGAAAGATAATTGAACAAGCAGGAGTGCTACGATACTCTTTAAGAAAGCAGTGGATGAATTTCTATAGTTTGTTGATTGGATGTTTTTGGGTTCTCCTTGGAGTGATGGTGTTCCAGAAAAGATCTGGTTTCCTTGTAAAATTGTGGACTAGGATACATCCAAAGCCAAATCAACCATTGGCTCATCAACAGTGGGTCTTACTACGGAGAAAACAGCATCAACAAGTCAAAGATTCTCCTAAAGGAGCCGGGAAATGGCGGAAGGTGCTCCTAAGAATATTTATTGTAGTTGGGATCATCGGGTCCATTTGGTTATTTTGGTTCCTGAACCAGACAGCCATTTTGAGAAGAGAAGAAACACTTGCAAACATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTTAATGTTAGCATGAACCATGTTCATGCATTGGCCGTTCTTACCTCTACCTTCCACCATGGAAAACAACCTTCTGCCATTGATCAGAAAACATTTGGTGAGTATACAGAAAGAACATCCTTTGAAAGACCACTAACTAGTGGTGTAGCTTATGCTTTGAAAGTTAATCACTCAGAAAGAGAGCAATTTGAGATGATGCATGGATGGACAATAAAGAAAATGGAGACAGAGGACCAAACTCTTGTTCAAGATTGTGACCCAGAAAATTTGGAGCCTGCACCAATTCAAGATGAATATGCACCTGTCATATTTTCTCAAGAAACAGTTGCACATATAGTTTCTATAGATATGATGTCTGGAAAAGAAGATCGGGAGAACATACTGCGAGCTAGAGCTTCTGGAAAGGGAGTCCTTACATCTCCTTTTAAGCTTTTGAAATCTAATCACCTTGGAGTTGTCCTCACATTTGCTGTCTATAACACTGACGTCCCACCAGATGCCACTCCTGAGCAACGTATTGAAGCCACTGTTGGTTATCTAGGTGCATCTTATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACGACCAATGATTCTGCTCCCATCAACATGTATGGTTCTGATTTTACTGATACTGGGCTACTGCATATTAGTAAACTTGATTTTGGCGATCCATTAAGAAGGCATGAGATGCATTGTAGATTTAAGCATAAACCTCCACCTCCTTGGACAGCTATCAATTCATCAGTAGGCGTCCTAATCATTACCTTGCTCGTTGGTCATATTTTTCGTGCAGCCATAAGTCGAATCGCAAAAGTGGAGGATGACTATCACAAGATGATGTGGCTTAAAAGTCGTGCTGAAGCTGCCGATGTGGCGAAATCGCAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTGAAATTACTGATGGACACTAACCTTGATTCGAATCAACTGGATTTTGCCCAGACTGCTCATGAGAGTGGAAAAGATCTGATATCACTTATAAATAAGGTTCTTGATCAAGCTAAGATAGAATCAGGAAGGCTTGAACTTGAATCTGTACCTTTCGATCTGCGTGCTATACTTGATAATGTTCTCTCACCTTTTTCACTCAAATCCAATGATAAGGGAATTGAGTTGGCTGTTTATGTCTCTGATTTGGTGCCTGAAATTGTGATTGGTGACCCCGGACGCTTTCGTCAAATAATTACTCATCTGGTTGGAAATTCAGTCAAGTTTACTCATAAAAAAGGACACATATTAATCTCAGTGCATCTGGCTGATGAAGTGAGAGGCCCAGTTGATTTTATGGACATTGTGCTTAGACAAGGCAAATATGTTGTTAGAGATGCATCGAACAATAATTGTACTACATTCAGTGGGTTACCTGTGGTGGATAGATGGAAAAGCTGGGAGGATTTCAAAAAGTTCAGCGGGACGGACGCAGTGGAGGAACCCAAAATGATTAGAATACTCGTGACTGTTGAGGATACTGGTATAGGAATTCCCCAAAAAGCACAAAGCCGAATATTCACTCCTTTTATGCAGGCTGATAGTTCCACTTCTCGGACGTATGGTGGTACGGGAATAGGATTGAGTATTAGCAAACGGTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAGCCTGGTATAGGTAGCACATTTTCATTTACGGTTTCTTTCCAGAAAGGGGAAATAAGTTTTCTGGATACCAGACGGCTGCAGTATGATCTGGGTATTGTGGAGTTCCAGGGTCTAAGAGCATTAATAATTGATAATAGCTGCATTCGAGCAGAGGTCACGAGATATCATCTGCAGAGGCTGGGGATTTCTGTTGATATAGCTCTGAGTGCAGAATCTGCTTATCAATATTTATCCAATACTTCCAACACAAGAGCATCGACACAATTGGCCATGATTCTTATAGATGAAGATATTTGGGACAAGAAAGTGGGTCTCAAGTTCCATCTTTTGTTTAAAGAGCACGTGGATAAAAGTGTGACAAATGTCCAGATGAATACTCCCAAGCTCTTTCTCTTGACAACCCCCAGTAGCTCCAATGAGCAAAATGAACTTAAATCTTCTGGTCATGTAAATAACATATTAAGAAAACCTCTTCAGTTAAATGTGTTAGTTAGTTGCTTCCGCGAAGCCTTTGGGATCGAGAAGAGGAATCAAGTAATTATTAAAAGACCATCTACTCTAAGGAATCTTCTGACAGAAAAGCATATTTTGGTTGTGGATGACAATGCGGTGAACAGAATGGTGGCAGAAGGTGCCCTAAAGAAATATGGAGCAGTTGTAACTTGTGTAAAAAGTGGAAAGGATGCTGTGGCTCTCCTCAACCCTCCACACAACTTTGATGCTTGCTTCATGGATCTCCAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACAGGTCCGTGCTGTCGAAAGTGGGGTGAATGCGAAAATTACATCTGTAGAAGTGTCAACTGAGGACAATAAGGTCCATTGGCACACGCCAATATTTGCCATGACGGCAGATTTAATTCAGGCTATGAATGAAGAGTGCGTGAAGTGTGGGATGGATGGTTATGTAGCTAAACCATTTGAAGAAGAGCAACTTTATTCAGCTCTAGCATGCTTTTTTGAGACTACTTAA | 3723 | 41.82 | MWRGCSGGAGVFLKLLRCLLRMSLSCKFSTSNGKFPAGFKLKKAKEHLFIVLSSWFSLRSNNVNSGTKQKTSNLFDEETRTLLRHFNVSKNQLQALASLLSESDRMSSLGCTNDFGSDTSQLDGIACALRLLYWEQDLHKQYVWVGESADSNFGQCPIRTEKIPENSDQLFSEDVTVPFAADLSVSLLSTGNQLCGKIIEQAGVLRYSLRKQWMNFYSLLIGCFWVLLGVMVFQKRSGFLVKLWTRIHPKPNQPLAHQQWVLLRRKQHQQVKDSPKGAGKWRKVLLRIFIVVGIIGSIWLFWFLNQTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQKTFGEYTERTSFERPLTSGVAYALKVNHSEREQFEMMHGWTIKKMETEDQTLVQDCDPENLEPAPIQDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDVPPDATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNDSAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFRAAISRIAKVEDDYHKMMWLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSNQLDFAQTAHESGKDLISLINKVLDQAKIESGRLELESVPFDLRAILDNVLSPFSLKSNDKGIELAVYVSDLVPEIVIGDPGRFRQIITHLVGNSVKFTHKKGHILISVHLADEVRGPVDFMDIVLRQGKYVVRDASNNNCTTFSGLPVVDRWKSWEDFKKFSGTDAVEEPKMIRILVTVEDTGIGIPQKAQSRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGEISFLDTRRLQYDLGIVEFQGLRALIIDNSCIRAEVTRYHLQRLGISVDIALSAESAYQYLSNTSNTRASTQLAMILIDEDIWDKKVGLKFHLLFKEHVDKSVTNVQMNTPKLFLLTTPSSSNEQNELKSSGHVNNILRKPLQLNVLVSCFREAFGIEKRNQVIIKRPSTLRNLLTEKHILVVDDNAVNRMVAEGALKKYGAVVTCVKSGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVESGVNAKITSVEVSTEDNKVHWHTPIFAMTADLIQAMNEECVKCGMDGYVAKPFEEEQLYSALACFFETT | 1240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 39417920 | 39426595 | + | Lag0009454.1 | Lac9g1967 | 620893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g1967 | 1240 | Gene3D | - | 61 | 105 | - | - | |
Lac9g1967 | 1240 | Gene3D | - | 304 | 356 | - | - | |
Lac9g1967 | 1240 | Pfam | CHASE domain | 356 | 550 | IPR006189 | - | |
Lac9g1967 | 1240 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 846 | 920 | IPR003594 | - | |
Lac9g1967 | 1240 | Pfam | His Kinase A (phospho-acceptor) domain | 638 | 703 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Lac9g1967 | 1240 | SMART | HisKA_10 | 638 | 703 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Lac9g1967 | 1240 | ProSiteProfiles | Response regulatory domain profile. | 1102 | 1237 | IPR001789 | GO:0000160(InterPro) | |
Lac9g1967 | 1240 | Gene3D | CHASE domain | 357 | 584 | IPR042240 | - | |
Lac9g1967 | 1240 | SMART | REC_2 | 1101 | 1233 | IPR001789 | GO:0000160(InterPro) | |
Lac9g1967 | 1240 | SUPERFAMILY | Homodimeric domain of signal transducing histidine kinase | 625 | 704 | IPR036097 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Lac9g1967 | 1240 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 280 | 1235 | IPR050956 | - | |
Lac9g1967 | 1240 | SMART | HKATPase_4 | 750 | 922 | IPR003594 | - | |
Lac9g1967 | 1240 | Gene3D | - | 1096 | 1239 | - | - | |
Lac9g1967 | 1240 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 692 | 918 | IPR036890 | - | |
Lac9g1967 | 1240 | SMART | CHASE_2 | 353 | 552 | IPR006189 | - | |
Lac9g1967 | 1240 | Pfam | Response regulator receiver domain | 1103 | 1233 | IPR001789 | GO:0000160(InterPro) | |
Lac9g1967 | 1240 | CDD | HATPase_EvgS-ArcB-TorS-like | 755 | 918 | - | - | |
Lac9g1967 | 1240 | Gene3D | - | 941 | 1089 | - | - | |
Lac9g1967 | 1240 | SUPERFAMILY | CheY-like | 941 | 1078 | IPR011006 | - | |
Lac9g1967 | 1240 | ProSiteProfiles | Response regulatory domain profile. | 946 | 1078 | IPR001789 | GO:0000160(InterPro) | |
Lac9g1967 | 1240 | FunFam | Histidine kinase 4 | 610 | 701 | - | - | |
Lac9g1967 | 1240 | Gene3D | - | 702 | 924 | IPR036890 | - | |
Lac9g1967 | 1240 | SUPERFAMILY | CheY-like | 1100 | 1234 | IPR011006 | - | |
Lac9g1967 | 1240 | ProSiteProfiles | Histidine kinase domain profile. | 645 | 922 | IPR005467 | - | |
Lac9g1967 | 1240 | CDD | REC_hyHK_CKI1_RcsC-like | 1103 | 1233 | - | - | |
Lac9g1967 | 1240 | CDD | HisKA | 638 | 699 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Lac9g1967 | 1240 | ProSiteProfiles | CHASE domain profile. | 353 | 577 | IPR006189 | - | |
Lac9g1967 | 1240 | Gene3D | - | 607 | 701 | - | - | |
Lac9g1967 | 1240 | PRINTS | Bacterial sensor protein C-terminal signature | 882 | 900 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Lac9g1967 | 1240 | PRINTS | Bacterial sensor protein C-terminal signature | 865 | 875 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Lac9g1967 | 1240 | PRINTS | Bacterial sensor protein C-terminal signature | 847 | 861 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Lac9g1967 | 1240 | PRINTS | Bacterial sensor protein C-terminal signature | 906 | 919 | IPR004358 | GO:0016310(InterPro)|GO:0016772(InterPro) | |
Lac9g1967 | 1240 | FunFam | Histidine kinase 4 | 357 | 584 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g1833 | Lac-Chr4:37496053 | Lac9g1967 | Lac-Chr9:39417920 | 6.50E-305 | dispersed | |
Lac6g2537 | Lac-Chr6:43146084 | Lac9g1967 | Lac-Chr9:39417920 | 1.40E-26 | dispersed | |
Lac8g2211 | Lac-Chr8:40434116 | Lac9g1967 | Lac-Chr9:39417920 | 5.20E-272 | dispersed | |
Lac2g0516 | Lac-Chr2:3814689 | Lac9g1967 | Lac-Chr9:39417920 | 1.50E-43 | transposed | |
Lac5g0101 | Lac-Chr5:817335 | Lac9g1967 | Lac-Chr9:39417920 | 2.60E-42 | transposed | |
Lac6g1882 | Lac-Chr6:31898734 | Lac9g1967 | Lac-Chr9:39417920 | 2.00E-09 | transposed | |
Lac6g2159 | Lac-Chr6:37815640 | Lac9g1967 | Lac-Chr9:39417920 | 1.50E-32 | transposed | |
Lac7g0636 | Lac-Chr7:5099576 | Lac9g1967 | Lac-Chr9:39417920 | 7.70E-12 | transposed | |
Lac12g0372 | Lac-Chr12:4297308 | Lac9g1967 | Lac-Chr9:39417920 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24443 | PF03924 | CHASE | 3.80E-35 | CL0165 | Lac | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g1967 | K14489 | - | csv:101221294 | 2170.97 |