Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1967 ATGTGGAGGGGTTGCTCTGGCGGAGCTGGGGTTTTTCTCAAGCTCTTGAGGTGCTTACTGAGGATGTCTTTGAGCTGCAAGTTTTCTACCTCTAATGGAAAATTTCCAGCTGGGTTTAAGCTGAAGAAGGCTAAGGAACATCTGTTTATAGTTTTGAGCAGTTGGTTTTCCTTGCGTTCGAATAATGTGAATAGTGGAACAAAACAGAAGACCTCGAACTTGTTCGATGAAGAAACTCGAACTTTGCTGCGGCATTTCAATGTAAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTTGTTGTCCGAATCAGATCGGATGTCATCCCTCGGGTGCACCAACGATTTTGGATCTGACACATCACAGTTGGATGGAATTGCCTGTGCCCTGAGGTTACTGTACTGGGAGCAAGATTTGCACAAGCAGTATGTATGGGTTGGAGAGAGTGCAGATTCCAATTTTGGGCAGTGTCCAATTCGAACTGAGAAGATCCCTGAAAATTCTGACCAATTATTCTCTGAGGACGTAACTGTTCCATTTGCTGCAGACTTATCCGTCTCTTTACTTTCTACTGGAAATCAGCTTTGTGGAAAGATAATTGAACAAGCAGGAGTGCTACGATACTCTTTAAGAAAGCAGTGGATGAATTTCTATAGTTTGTTGATTGGATGTTTTTGGGTTCTCCTTGGAGTGATGGTGTTCCAGAAAAGATCTGGTTTCCTTGTAAAATTGTGGACTAGGATACATCCAAAGCCAAATCAACCATTGGCTCATCAACAGTGGGTCTTACTACGGAGAAAACAGCATCAACAAGTCAAAGATTCTCCTAAAGGAGCCGGGAAATGGCGGAAGGTGCTCCTAAGAATATTTATTGTAGTTGGGATCATCGGGTCCATTTGGTTATTTTGGTTCCTGAACCAGACAGCCATTTTGAGAAGAGAAGAAACACTTGCAAACATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTTAATGTTAGCATGAACCATGTTCATGCATTGGCCGTTCTTACCTCTACCTTCCACCATGGAAAACAACCTTCTGCCATTGATCAGAAAACATTTGGTGAGTATACAGAAAGAACATCCTTTGAAAGACCACTAACTAGTGGTGTAGCTTATGCTTTGAAAGTTAATCACTCAGAAAGAGAGCAATTTGAGATGATGCATGGATGGACAATAAAGAAAATGGAGACAGAGGACCAAACTCTTGTTCAAGATTGTGACCCAGAAAATTTGGAGCCTGCACCAATTCAAGATGAATATGCACCTGTCATATTTTCTCAAGAAACAGTTGCACATATAGTTTCTATAGATATGATGTCTGGAAAAGAAGATCGGGAGAACATACTGCGAGCTAGAGCTTCTGGAAAGGGAGTCCTTACATCTCCTTTTAAGCTTTTGAAATCTAATCACCTTGGAGTTGTCCTCACATTTGCTGTCTATAACACTGACGTCCCACCAGATGCCACTCCTGAGCAACGTATTGAAGCCACTGTTGGTTATCTAGGTGCATCTTATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACGACCAATGATTCTGCTCCCATCAACATGTATGGTTCTGATTTTACTGATACTGGGCTACTGCATATTAGTAAACTTGATTTTGGCGATCCATTAAGAAGGCATGAGATGCATTGTAGATTTAAGCATAAACCTCCACCTCCTTGGACAGCTATCAATTCATCAGTAGGCGTCCTAATCATTACCTTGCTCGTTGGTCATATTTTTCGTGCAGCCATAAGTCGAATCGCAAAAGTGGAGGATGACTATCACAAGATGATGTGGCTTAAAAGTCGTGCTGAAGCTGCCGATGTGGCGAAATCGCAGTTTCTGGCAACAGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTGAAATTACTGATGGACACTAACCTTGATTCGAATCAACTGGATTTTGCCCAGACTGCTCATGAGAGTGGAAAAGATCTGATATCACTTATAAATAAGGTTCTTGATCAAGCTAAGATAGAATCAGGAAGGCTTGAACTTGAATCTGTACCTTTCGATCTGCGTGCTATACTTGATAATGTTCTCTCACCTTTTTCACTCAAATCCAATGATAAGGGAATTGAGTTGGCTGTTTATGTCTCTGATTTGGTGCCTGAAATTGTGATTGGTGACCCCGGACGCTTTCGTCAAATAATTACTCATCTGGTTGGAAATTCAGTCAAGTTTACTCATAAAAAAGGACACATATTAATCTCAGTGCATCTGGCTGATGAAGTGAGAGGCCCAGTTGATTTTATGGACATTGTGCTTAGACAAGGCAAATATGTTGTTAGAGATGCATCGAACAATAATTGTACTACATTCAGTGGGTTACCTGTGGTGGATAGATGGAAAAGCTGGGAGGATTTCAAAAAGTTCAGCGGGACGGACGCAGTGGAGGAACCCAAAATGATTAGAATACTCGTGACTGTTGAGGATACTGGTATAGGAATTCCCCAAAAAGCACAAAGCCGAATATTCACTCCTTTTATGCAGGCTGATAGTTCCACTTCTCGGACGTATGGTGGTACGGGAATAGGATTGAGTATTAGCAAACGGTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAGCCTGGTATAGGTAGCACATTTTCATTTACGGTTTCTTTCCAGAAAGGGGAAATAAGTTTTCTGGATACCAGACGGCTGCAGTATGATCTGGGTATTGTGGAGTTCCAGGGTCTAAGAGCATTAATAATTGATAATAGCTGCATTCGAGCAGAGGTCACGAGATATCATCTGCAGAGGCTGGGGATTTCTGTTGATATAGCTCTGAGTGCAGAATCTGCTTATCAATATTTATCCAATACTTCCAACACAAGAGCATCGACACAATTGGCCATGATTCTTATAGATGAAGATATTTGGGACAAGAAAGTGGGTCTCAAGTTCCATCTTTTGTTTAAAGAGCACGTGGATAAAAGTGTGACAAATGTCCAGATGAATACTCCCAAGCTCTTTCTCTTGACAACCCCCAGTAGCTCCAATGAGCAAAATGAACTTAAATCTTCTGGTCATGTAAATAACATATTAAGAAAACCTCTTCAGTTAAATGTGTTAGTTAGTTGCTTCCGCGAAGCCTTTGGGATCGAGAAGAGGAATCAAGTAATTATTAAAAGACCATCTACTCTAAGGAATCTTCTGACAGAAAAGCATATTTTGGTTGTGGATGACAATGCGGTGAACAGAATGGTGGCAGAAGGTGCCCTAAAGAAATATGGAGCAGTTGTAACTTGTGTAAAAAGTGGAAAGGATGCTGTGGCTCTCCTCAACCCTCCACACAACTTTGATGCTTGCTTCATGGATCTCCAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACAGGTCCGTGCTGTCGAAAGTGGGGTGAATGCGAAAATTACATCTGTAGAAGTGTCAACTGAGGACAATAAGGTCCATTGGCACACGCCAATATTTGCCATGACGGCAGATTTAATTCAGGCTATGAATGAAGAGTGCGTGAAGTGTGGGATGGATGGTTATGTAGCTAAACCATTTGAAGAAGAGCAACTTTATTCAGCTCTAGCATGCTTTTTTGAGACTACTTAA 3723 41.82 MWRGCSGGAGVFLKLLRCLLRMSLSCKFSTSNGKFPAGFKLKKAKEHLFIVLSSWFSLRSNNVNSGTKQKTSNLFDEETRTLLRHFNVSKNQLQALASLLSESDRMSSLGCTNDFGSDTSQLDGIACALRLLYWEQDLHKQYVWVGESADSNFGQCPIRTEKIPENSDQLFSEDVTVPFAADLSVSLLSTGNQLCGKIIEQAGVLRYSLRKQWMNFYSLLIGCFWVLLGVMVFQKRSGFLVKLWTRIHPKPNQPLAHQQWVLLRRKQHQQVKDSPKGAGKWRKVLLRIFIVVGIIGSIWLFWFLNQTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQKTFGEYTERTSFERPLTSGVAYALKVNHSEREQFEMMHGWTIKKMETEDQTLVQDCDPENLEPAPIQDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTDVPPDATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNDSAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFRAAISRIAKVEDDYHKMMWLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSNQLDFAQTAHESGKDLISLINKVLDQAKIESGRLELESVPFDLRAILDNVLSPFSLKSNDKGIELAVYVSDLVPEIVIGDPGRFRQIITHLVGNSVKFTHKKGHILISVHLADEVRGPVDFMDIVLRQGKYVVRDASNNNCTTFSGLPVVDRWKSWEDFKKFSGTDAVEEPKMIRILVTVEDTGIGIPQKAQSRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGEISFLDTRRLQYDLGIVEFQGLRALIIDNSCIRAEVTRYHLQRLGISVDIALSAESAYQYLSNTSNTRASTQLAMILIDEDIWDKKVGLKFHLLFKEHVDKSVTNVQMNTPKLFLLTTPSSSNEQNELKSSGHVNNILRKPLQLNVLVSCFREAFGIEKRNQVIIKRPSTLRNLLTEKHILVVDDNAVNRMVAEGALKKYGAVVTCVKSGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVESGVNAKITSVEVSTEDNKVHWHTPIFAMTADLIQAMNEECVKCGMDGYVAKPFEEEQLYSALACFFETT 1240
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 39417920 39426595 + Lag0009454.1 Lac9g1967 620893
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1967 1240 Gene3D - 61 105 - -
Lac9g1967 1240 Gene3D - 304 356 - -
Lac9g1967 1240 Pfam CHASE domain 356 550 IPR006189 -
Lac9g1967 1240 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 846 920 IPR003594 -
Lac9g1967 1240 Pfam His Kinase A (phospho-acceptor) domain 638 703 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac9g1967 1240 SMART HisKA_10 638 703 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac9g1967 1240 ProSiteProfiles Response regulatory domain profile. 1102 1237 IPR001789 GO:0000160(InterPro)
Lac9g1967 1240 Gene3D CHASE domain 357 584 IPR042240 -
Lac9g1967 1240 SMART REC_2 1101 1233 IPR001789 GO:0000160(InterPro)
Lac9g1967 1240 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 625 704 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac9g1967 1240 PANTHER TWO-COMPONENT HISTIDINE KINASE 280 1235 IPR050956 -
Lac9g1967 1240 SMART HKATPase_4 750 922 IPR003594 -
Lac9g1967 1240 Gene3D - 1096 1239 - -
Lac9g1967 1240 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 692 918 IPR036890 -
Lac9g1967 1240 SMART CHASE_2 353 552 IPR006189 -
Lac9g1967 1240 Pfam Response regulator receiver domain 1103 1233 IPR001789 GO:0000160(InterPro)
Lac9g1967 1240 CDD HATPase_EvgS-ArcB-TorS-like 755 918 - -
Lac9g1967 1240 Gene3D - 941 1089 - -
Lac9g1967 1240 SUPERFAMILY CheY-like 941 1078 IPR011006 -
Lac9g1967 1240 ProSiteProfiles Response regulatory domain profile. 946 1078 IPR001789 GO:0000160(InterPro)
Lac9g1967 1240 FunFam Histidine kinase 4 610 701 - -
Lac9g1967 1240 Gene3D - 702 924 IPR036890 -
Lac9g1967 1240 SUPERFAMILY CheY-like 1100 1234 IPR011006 -
Lac9g1967 1240 ProSiteProfiles Histidine kinase domain profile. 645 922 IPR005467 -
Lac9g1967 1240 CDD REC_hyHK_CKI1_RcsC-like 1103 1233 - -
Lac9g1967 1240 CDD HisKA 638 699 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac9g1967 1240 ProSiteProfiles CHASE domain profile. 353 577 IPR006189 -
Lac9g1967 1240 Gene3D - 607 701 - -
Lac9g1967 1240 PRINTS Bacterial sensor protein C-terminal signature 882 900 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac9g1967 1240 PRINTS Bacterial sensor protein C-terminal signature 865 875 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac9g1967 1240 PRINTS Bacterial sensor protein C-terminal signature 847 861 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac9g1967 1240 PRINTS Bacterial sensor protein C-terminal signature 906 919 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac9g1967 1240 FunFam Histidine kinase 4 357 584 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1833 Lac-Chr4:37496053 Lac9g1967 Lac-Chr9:39417920 6.50E-305 dispersed
Lac6g2537 Lac-Chr6:43146084 Lac9g1967 Lac-Chr9:39417920 1.40E-26 dispersed
Lac8g2211 Lac-Chr8:40434116 Lac9g1967 Lac-Chr9:39417920 5.20E-272 dispersed
Lac2g0516 Lac-Chr2:3814689 Lac9g1967 Lac-Chr9:39417920 1.50E-43 transposed
Lac5g0101 Lac-Chr5:817335 Lac9g1967 Lac-Chr9:39417920 2.60E-42 transposed
Lac6g1882 Lac-Chr6:31898734 Lac9g1967 Lac-Chr9:39417920 2.00E-09 transposed
Lac6g2159 Lac-Chr6:37815640 Lac9g1967 Lac-Chr9:39417920 1.50E-32 transposed
Lac7g0636 Lac-Chr7:5099576 Lac9g1967 Lac-Chr9:39417920 7.70E-12 transposed
Lac12g0372 Lac-Chr12:4297308 Lac9g1967 Lac-Chr9:39417920 0.00E+00 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24443 PF03924 CHASE 3.80E-35 CL0165 Lac TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1967 K14489 - csv:101221294 2170.97