Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1970 ATGCAAACTTCTCAGCTTCATAGAGGCCAACATATGTCGAAGAGACTATGTTATCAACCACTTCAAGGAGTGGATGCCTACTGTCTTTCCCAATTTCAATCTTTAGGTCGCCAATTATACTCCAGTGGTGGCAACCAAAGAGCCCAGTTCAATGTTCAAGACATCGGTGATCATTACTGCACTCTGGAGTCGTCCTCGGGAAGCCATGGCTATGCAACTCACAACTCAACATCAACCATCACTTTCTCACCCAATGGGAGCCCAGTATCACAACAGGATTCTCGTTCAAATCCTTCTGATCAGCATAATTCCCCTGACAATACGTATGGCTCCCCAGTAAGCGGATCCAGCATAACAGATGATATTAGTGACTTTAGGCACAAACTACGGGAATTGGAAACTGTGATGCTTGGCCCTGATTCTGATGTTATTGATAGTTTTGATAGTATCTACCAGGAGGGAACAGACAATCCAGAGATGGGAAGTTGGGGACAGGTGATGGATGCTATCACTAAAGGTAACTTAAAAAAGATCCTAATAACTTGTGCTAAAGCGGTATCAGATAATGATACTTTAATGGCACAATGGCTTATGGATGAATTGCGCAAGATGGTGTCGGTTCGTGGCGAACCGATGCAGAGGCTGGGAGCTTATATGTTGGAGGGGCTGGTTGCACGGATAGCCTCCTCAGGCAGTAGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGTGTAGAGCTCCTCTCATATATGCACGTTCTTTATGAGGTTTGCCCGTATTTCAAATTCGGATACATGTCTGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATAGAGTTCACATCATTGATTTCCAAATCTCTCAGGGTACTCAGTGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCCGGTGGACCACCTCACATTCGTATAACCGGTATAGATGATCCTGCATCAGCTTATGCTCGTGGAGGTGGGCTAGACATCGTTGGGAAGAGGCTCTCCAAGTTAGCAAAGTTATTTAATGTGCCATTTGAGTTTCACTCTGCTGCCATTTCTGGCTGCGATGTTCAGCAAAAAAATCTGGGCATTCGACGAGGGGAGGCTTTAGCAGTTAACTTTGCCTTCATGCTACACCATATGCCAGATGAGAGCGTAAGCACCGAAAATCATCGAGATAGGCTATTGAGGCTGGTTAAGGGTCTGTCTCCAAAGGTAGTGACCCTTGTTGAACAAGAATCCAACACAAACACTGCTGCATTCTATCCCCGGTTCATCGAAACGCTGGATTACTACAACGCAATGTTTGAATCAATCGACGTTACTCTTCCAAGACAGCACAAGGAGCGAATCAACATCGAGCAGCATTGTCTAGCCAGGGAAGTCGTCAACATACTAGCATGTGAAGGGGCTGAGAGAGTGGAACGACATGAGCTACTCGGAAAGTGGAGACTGCGATTCGCAATGGCAGGATTCACTCCTTACCCGTTAAGTTCCTTGGTGAATGCTACCATCAAAACGTTATTAGATAACTATTCTAACAGGTATAGGCTTGAAGAAAGAGAAGGGCTCTGTATCTAG 1593 45.26 MQTSQLHRGQHMSKRLCYQPLQGVDAYCLSQFQSLGRQLYSSGGNQRAQFNVQDIGDHYCTLESSSGSHGYATHNSTSTITFSPNGSPVSQQDSRSNPSDQHNSPDNTYGSPVSGSSITDDISDFRHKLRELETVMLGPDSDVIDSFDSIYQEGTDNPEMGSWGQVMDAITKGNLKKILITCAKAVSDNDTLMAQWLMDELRKMVSVRGEPMQRLGAYMLEGLVARIASSGSSIYKSLRCKEPASVELLSYMHVLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAYARGGGLDIVGKRLSKLAKLFNVPFEFHSAAISGCDVQQKNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFYPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEREGLCI 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39446838 39448430 + Lag0009457.1 Lac9g1970 620896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1970 530 ProSiteProfiles GRAS family profile. 166 530 IPR005202 -
Lac9g1970 530 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 145 529 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac9g1970 530 Pfam GRAS domain family 175 527 IPR005202 -
Lac9g1970 530 MobiDBLite consensus disorder prediction 66 118 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3147 Lac-Chr1:51736675 Lac9g1970 Lac-Chr9:39446838 4.70E-161 dispersed
Lac2g1349 Lac-Chr2:11330182 Lac9g1970 Lac-Chr9:39446838 6.90E-134 dispersed
Lac2g1740 Lac-Chr2:16264994 Lac9g1970 Lac-Chr9:39446838 5.90E-114 dispersed
Lac5g0961 Lac-Chr5:14555376 Lac9g1970 Lac-Chr9:39446838 1.20E-161 dispersed
Lac7g2743 Lac-Chr7:46582653 Lac9g1970 Lac-Chr9:39446838 2.30E-56 dispersed
Lac8g2990 Lac-Chr8:46753538 Lac9g1970 Lac-Chr9:39446838 5.00E-64 dispersed
Lac9g1970 Lac-Chr9:39446838 Lac9g2460 Lac-Chr9:43500780 2.70E-36 dispersed
Lac9g1970 Lac-Chr9:39446838 Lac10g3111 Lac-Chr10:45491599 1.10E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24444 PF03514 GRAS 2.90E-128 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1970 K27748 - csv:101221914 997.267