Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1971 ATGAATGTGAGGATTATACTCTGGCGCATTCCATTTAAGATTCAGCCGCCAGCTCCTAGTTTATCTGGCTTGGCTTCATTCTCCTTGATGCCAGCTGAAAATTCAATTCCATTTGATCGAGATGCAGAGCCTTTTGTTGAGGTTGATCCAACTGGAAGGTTTGGACGATACGATGATCTTCTTGGGTCTGGAGCGGTGAAGAAAGTTTATAGGGCATTTGATCAGGAGGAAGGTATAGAGGTTGCTTGGAATCAGGTTCGATTGAGAAATTTTAGTGGAGATCCAGTGTTCATTAACCGCTTGAGATCTGAGGTTCAGCTGCTGAGCACGTTAAACAACAAATATATCATTGTTTGTTACAATGTTTGGAATGATGATGAGCGTAATACGTTGAATTTCATTACGGAGGTGTGCACATCAGGAAATCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAGAAGTGGTCAAAACAGGTACTCGAGGGATTGGATTATCTTCATACTCATGAGCCTTGCATTATTCACAGAGATCTCAACTGCAGCAACATATTTGTCAATGGGAACATTGGACAGGTTAAAATAGGTGATCTAGGCTTTGCAGCTATAGTTGGCAGGAGTCATGCTGCACATTCAATCATAGGCACACCAGAGTATATGGCACCAGAGCTGTATGAGGAAGATTACACGGAGATGGTGGACATATACTCCTTCGCAATGTGTTTGCTCGAGATGGTTACAACGGAGATACCATACAGTGAATGTGATAGTGTTGCCAAGATATACAAGAAGGTGACAACTGGAATAAAGCCCCAAGCACTAAACAAAGTGACTGACGATGAAGTCAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGGGCGAGGCCTTCCGCTTCTGAACTTCTCAAGGACCCTTTCTTTGATGAAGTCAGGGATGAAGATTCTGAACAGACTTATTAA 978 42.64 MNVRIILWRIPFKIQPPAPSLSGLASFSLMPAENSIPFDRDAEPFVEVDPTGRFGRYDDLLGSGAVKKVYRAFDQEEGIEVAWNQVRLRNFSGDPVFINRLRSEVQLLSTLNNKYIIVCYNVWNDDERNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTTEIPYSECDSVAKIYKKVTTGIKPQALNKVTDDEVRAFIEKCIAQPRARPSASELLKDPFFDEVRDEDSEQTY 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39452696 39454363 + Lag0009458.1 Lac9g1971 620897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1971 325 Gene3D Phosphorylase Kinase; domain 1 40 136 - -
Lac9g1971 325 Pfam Protein kinase domain 59 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g1971 325 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g1971 325 FunFam probable serine/threonine-protein kinase WNK9 138 319 - -
Lac9g1971 325 CDD STKc_WNK 53 313 - -
Lac9g1971 325 Gene3D Transferase(Phosphotransferase) domain 1 138 319 - -
Lac9g1971 325 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 43 315 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lac9g1971 325 SUPERFAMILY Protein kinase-like (PK-like) 48 314 IPR011009 -
Lac9g1971 325 FunFam Probable serine/threonine-protein kinase WNK1 40 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac9g1971 Lac-Chr9:39452696 Lac9g2333 Lac-Chr9:42656667 8.80E-91 dispersed
Lac9g1971 Lac-Chr9:39452696 Lac5g0974 Lac-Chr5:14935619 1.40E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86440 PF00069 Pkinase 1.60E-50 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1971 K08867 - csv:101222153 591.267