Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2004 | ATGATCGAGAAAATGGCCGATGATGAATTCTCAAACTGTTTTCTCCAAATCCCTCACGCCGGATCCAACCCTTCTCTCGTCAAGAAGAAGAGAAACCTCCCCGGAACTCCAGATCCCGAAGCGGAAGTGATAGCGTTGTCGCCGAAGACACTGATGGCGACGAATAGGTTCGTGTGTGAAATATGTGGGAAAGGGTTTCAAAGAGACCAAAACTTGCAGCTCCATAGGCGAGGACATAACCTTCCATGGAAGCTGAAGCAAAGAAGTAGCAAAGAGCCAAAGAAGAGAGTGTATGTATGTCCTGAGAAGAGCTGTGTGCATCACCATCCATCGAGGGCTTTGGGAGACCTCACGGGGATAAAGAAGCACTTTTGTAGAAAGCACGGAGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGAGATACGCTGTGCAGTCTGATTGGAAAGCACACTCCAAAACTTGTGGCACTAGAGAGTACAAATGTGACTGCGGGACTCTATTTTCAAGGAGAGACAGCTTCATCACTCACAGGGCCTTCTGCGATGCATTAGCCGAAGAAACAGCAAGAGTAAACGCAGCCACAACAATAACCAACGCCATGGCCGCCGCCAGCAATTTCAATTACAATTTCATGGCCGGAGCCACAGAACCCCCATTCATTTCCCAACATTTCCCTTCAATTTTCAAGCCAATAATCTCAGTGAACGAAGCAACAATATTGAACCAGCAACAGCAACAACAAACCACCAGCTGCAGTGGCCTCTCGTTGAGAACCAACAACAACAATAATCTAATAAACCCCATGAATTCAGGGCTAATGTACTGTGACCCTCTATTAAATTCTTGCCCACCACCAGCACTAGCTGATTATAATCTGAATTGGGTATTTGGAACAAAGAATAATTGTGATCATGATAATGAAGATTCAGATCAAAATCATCAGCCGTTGATGAGTGGAGGTGTTTCTTCACTGTACAGCCACCAATTACAGCAAGTGAATCAAACCCACATGGCAAATTTGTCAGCCACTGCTTTGCTGCAAAAAGCTGCTCAAATTGGGCCAAATTCCAGCTCCGGCCCATCAATAATGCTCCAAGAGGGATTTGCATTCAAATGCAGTGGCAGTACGGTTCAAAATGGGAGTGAATTTTCCAATTCTGGCTCTGCAAACCCAATTATGGCGACGGTTGGCAGTTTTGCTGAGAATGAGAATGAGAATGAGATGTACACTGCAAAACGCCGTCGTACTCACAGTGAATTAGAGAGTGGAAATGGAAGTGGAACAACAGGAGGAGGCCAGACAAGGGATTTTCTTGGGGTTGGTGCCAATACTATTTGCCACACCTCATCAATCAATGGATGGATTTAG | 1371 | 45.44 | MIEKMADDEFSNCFLQIPHAGSNPSLVKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVNAATTITNAMAAASNFNYNFMAGATEPPFISQHFPSIFKPIISVNEATILNQQQQQQTTSCSGLSLRTNNNNNLINPMNSGLMYCDPLLNSCPPPALADYNLNWVFGTKNNCDHDNEDSDQNHQPLMSGGVSSLYSHQLQQVNQTHMANLSATALLQKAAQIGPNSSSGPSIMLQEGFAFKCSGSTVQNGSEFSNSGSANPIMATVGSFAENENENEMYTAKRRRTHSELESGNGSGTTGGGQTRDFLGVGANTICHTSSINGWI | 456 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 39675566 | 39677346 | - | Lag0009491.1 | Lac9g2004 | 620930 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2004 | 456 | SMART | c2h2final6 | 133 | 153 | IPR013087 | - | |
Lac9g2004 | 456 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Lac9g2004 | 456 | Gene3D | Classic Zinc Finger | 53 | 80 | - | - | |
Lac9g2004 | 456 | FunFam | protein indeterminate-domain 12-like | 36 | 104 | - | - | |
Lac9g2004 | 456 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Lac9g2004 | 456 | Gene3D | Classic Zinc Finger | 91 | 181 | - | - | |
Lac9g2004 | 456 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 443 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lac9g2004 | 456 | SUPERFAMILY | beta-beta-alpha zinc fingers | 56 | 153 | IPR036236 | - | |
Lac9g2004 | 456 | Pfam | Zinc finger, C2H2 type | 57 | 79 | IPR013087 | - | |
Lac9g2004 | 456 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 132 | 156 | - | - | |
Lac9g2004 | 456 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 94 | 128 | - | - | |
Lac9g2004 | 456 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 159 | 197 | - | - | |
Lac9g2004 | 456 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Lac9g2004 | 456 | MobiDBLite | consensus disorder prediction | 414 | 435 | - | - | |
Lac9g2004 | 456 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 111 | 190 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac2g0223 | Lac-Chr2:1709421 | Lac9g2004 | Lac-Chr9:39675566 | 4.00E-85 | dispersed | |
Lac3g2767 | Lac-Chr3:43584579 | Lac9g2004 | Lac-Chr9:39675566 | 1.20E-82 | dispersed | |
Lac4g2989 | Lac-Chr4:48131014 | Lac9g2004 | Lac-Chr9:39675566 | 9.00E-85 | dispersed | |
Lac5g2055 | Lac-Chr5:39018502 | Lac9g2004 | Lac-Chr9:39675566 | 7.50E-85 | dispersed | |
Lac6g0394 | Lac-Chr6:3228385 | Lac9g2004 | Lac-Chr9:39675566 | 6.30E-82 | dispersed | |
Lac7g2559 | Lac-Chr7:43841733 | Lac9g2004 | Lac-Chr9:39675566 | 2.40E-76 | dispersed | |
Lac8g2196 | Lac-Chr8:40265888 | Lac9g2004 | Lac-Chr9:39675566 | 4.50E-57 | dispersed | |
Lac4g2236 | Lac-Chr4:42057027 | Lac9g2004 | Lac-Chr9:39675566 | 1.30E-88 | transposed | |
Lac12g0528 | Lac-Chr12:5686990 | Lac9g2004 | Lac-Chr9:39675566 | 3.10E-94 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24448 | PF00096 | zf-C2H2 | 0.0019 | CL0361 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g2004 | K25870 | - | csv:101211656 | 522.316 |