Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2004 ATGATCGAGAAAATGGCCGATGATGAATTCTCAAACTGTTTTCTCCAAATCCCTCACGCCGGATCCAACCCTTCTCTCGTCAAGAAGAAGAGAAACCTCCCCGGAACTCCAGATCCCGAAGCGGAAGTGATAGCGTTGTCGCCGAAGACACTGATGGCGACGAATAGGTTCGTGTGTGAAATATGTGGGAAAGGGTTTCAAAGAGACCAAAACTTGCAGCTCCATAGGCGAGGACATAACCTTCCATGGAAGCTGAAGCAAAGAAGTAGCAAAGAGCCAAAGAAGAGAGTGTATGTATGTCCTGAGAAGAGCTGTGTGCATCACCATCCATCGAGGGCTTTGGGAGACCTCACGGGGATAAAGAAGCACTTTTGTAGAAAGCACGGAGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGAGATACGCTGTGCAGTCTGATTGGAAAGCACACTCCAAAACTTGTGGCACTAGAGAGTACAAATGTGACTGCGGGACTCTATTTTCAAGGAGAGACAGCTTCATCACTCACAGGGCCTTCTGCGATGCATTAGCCGAAGAAACAGCAAGAGTAAACGCAGCCACAACAATAACCAACGCCATGGCCGCCGCCAGCAATTTCAATTACAATTTCATGGCCGGAGCCACAGAACCCCCATTCATTTCCCAACATTTCCCTTCAATTTTCAAGCCAATAATCTCAGTGAACGAAGCAACAATATTGAACCAGCAACAGCAACAACAAACCACCAGCTGCAGTGGCCTCTCGTTGAGAACCAACAACAACAATAATCTAATAAACCCCATGAATTCAGGGCTAATGTACTGTGACCCTCTATTAAATTCTTGCCCACCACCAGCACTAGCTGATTATAATCTGAATTGGGTATTTGGAACAAAGAATAATTGTGATCATGATAATGAAGATTCAGATCAAAATCATCAGCCGTTGATGAGTGGAGGTGTTTCTTCACTGTACAGCCACCAATTACAGCAAGTGAATCAAACCCACATGGCAAATTTGTCAGCCACTGCTTTGCTGCAAAAAGCTGCTCAAATTGGGCCAAATTCCAGCTCCGGCCCATCAATAATGCTCCAAGAGGGATTTGCATTCAAATGCAGTGGCAGTACGGTTCAAAATGGGAGTGAATTTTCCAATTCTGGCTCTGCAAACCCAATTATGGCGACGGTTGGCAGTTTTGCTGAGAATGAGAATGAGAATGAGATGTACACTGCAAAACGCCGTCGTACTCACAGTGAATTAGAGAGTGGAAATGGAAGTGGAACAACAGGAGGAGGCCAGACAAGGGATTTTCTTGGGGTTGGTGCCAATACTATTTGCCACACCTCATCAATCAATGGATGGATTTAG 1371 45.44 MIEKMADDEFSNCFLQIPHAGSNPSLVKKKRNLPGTPDPEAEVIALSPKTLMATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSSKEPKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVNAATTITNAMAAASNFNYNFMAGATEPPFISQHFPSIFKPIISVNEATILNQQQQQQTTSCSGLSLRTNNNNNLINPMNSGLMYCDPLLNSCPPPALADYNLNWVFGTKNNCDHDNEDSDQNHQPLMSGGVSSLYSHQLQQVNQTHMANLSATALLQKAAQIGPNSSSGPSIMLQEGFAFKCSGSTVQNGSEFSNSGSANPIMATVGSFAENENENEMYTAKRRRTHSELESGNGSGTTGGGQTRDFLGVGANTICHTSSINGWI 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39675566 39677346 - Lag0009491.1 Lac9g2004 620930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2004 456 SMART c2h2final6 133 153 IPR013087 -
Lac9g2004 456 SMART c2h2final6 57 79 IPR013087 -
Lac9g2004 456 Gene3D Classic Zinc Finger 53 80 - -
Lac9g2004 456 FunFam protein indeterminate-domain 12-like 36 104 - -
Lac9g2004 456 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Lac9g2004 456 Gene3D Classic Zinc Finger 91 181 - -
Lac9g2004 456 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 443 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac9g2004 456 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Lac9g2004 456 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Lac9g2004 456 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 132 156 - -
Lac9g2004 456 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 94 128 - -
Lac9g2004 456 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 159 197 - -
Lac9g2004 456 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Lac9g2004 456 MobiDBLite consensus disorder prediction 414 435 - -
Lac9g2004 456 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0223 Lac-Chr2:1709421 Lac9g2004 Lac-Chr9:39675566 4.00E-85 dispersed
Lac3g2767 Lac-Chr3:43584579 Lac9g2004 Lac-Chr9:39675566 1.20E-82 dispersed
Lac4g2989 Lac-Chr4:48131014 Lac9g2004 Lac-Chr9:39675566 9.00E-85 dispersed
Lac5g2055 Lac-Chr5:39018502 Lac9g2004 Lac-Chr9:39675566 7.50E-85 dispersed
Lac6g0394 Lac-Chr6:3228385 Lac9g2004 Lac-Chr9:39675566 6.30E-82 dispersed
Lac7g2559 Lac-Chr7:43841733 Lac9g2004 Lac-Chr9:39675566 2.40E-76 dispersed
Lac8g2196 Lac-Chr8:40265888 Lac9g2004 Lac-Chr9:39675566 4.50E-57 dispersed
Lac4g2236 Lac-Chr4:42057027 Lac9g2004 Lac-Chr9:39675566 1.30E-88 transposed
Lac12g0528 Lac-Chr12:5686990 Lac9g2004 Lac-Chr9:39675566 3.10E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24448 PF00096 zf-C2H2 0.0019 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2004 K25870 - csv:101211656 522.316