Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2058 ATGGAGAGCTTATTAATTCTTACATTGATTGGTTGGGTATTTCTTGCTGGTTCTGCATGTTGCCAAAGGCCTGCCGTTGTGAACATTGGTGCGGTTTTCACTTTTGATTCTGTTATAGGAAGAGCGGCAAAGGTGGCAATGGAAGCTGCAATTTCGGATGTTAATGCAGATCCTTTCATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGATACACATTGTAATGTTCTCATGGGTTCTATTGGAGCTTTCCAGGTTCTTGAGAAAGATGTAGTAGCCATCGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTGCAGATTGCTAATAATCTCCAAGTGCCTCTTATATCATATGCTGCCACTGATCCAACTTTATCTGCTCTCCAATTCCCCTTTTTCCTACGGACTACTCAGAGTGATTCCTATCAAATGACTGCTATGGCAGAATTAATTGACTTTTATGAGTGGAAAGAGGTGATCATGATCTTTGTGGATGACGATTATGGTAGAAATGGAATATCCACTTTAACTGACGAACTTGACAAGAAGATGTTTAAAATTTCTTACAAAATACCCTTGCCTTCTCAGTTTAATCTCAGTGAAATCACAGACATACTCAATAAATCCAAGTTGCTTGGTCCTCGTATCTATGTTGTTCATGTCAATCCTGATCCTAGATTAAGTATCTTCAAAATAGCTCATCAACTTAATATGATGACAAGTGGTTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCAATTCTGCCCGTGCACCAAACCTCTCTAAACATCCTTCAAGGAGTGGTTGTACTTCGTCAACATACTCCTGAATCCAGCCGAAAAACAGCATTATGGTCTCGGTTAAGGAAGATGCTGCCAGAAGGGTCCAGAAATTCTTCATTGAATGTCTATGCTCTTAGTGCCTATGATACCATTCAAGTAGTTGCACGTTCAATTGATAAGTTTCTTAATGAAGGTAGGAGCATTACCTTCTCATTGAAGAGCAAGTTTCATGATTTAAATACATCTAAAATGCCCTGGGGGAAGCTCAAAATATTTGATGATGGTGCTTTTCTTTTGAGCATATTGTTGCAGACAAAATTTACTGGTTTAAGTGGTCAGATTGAGTTCAATTCAGATCGTAACATTGTCAATAGAGGCTATGAGGTGATCAATATCGATCAAACTGGATTGCGTAAAGTTGGTTTCTGGTCTAACATCACAGGCTTTGCAATCCAATCACCAGAAACTTTGAAACAGAAACGAATTAGTTATACTCACCTGAACCAGACTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAGACCACGTGGATGGGTGATTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACTTAGAGTAAGTTTCATTGAATTTGTTACAGCAATCAATGGAAGCGACAGAAACATTGAAGGGTATTGTATTGATCTGTTCAATGAAGCAAGAAAGCTGGTCCCGTATGATGTTCCTTACAGATTTATACCTTTTGGAAATGGTCACTCCAATCCTAGTTATAATGACCTTGTGAAGAAAGTTGCAGATGGTATATTTGATGCAGCTGTTGGAGATATTGCAATTGTTACCAATCGTACGAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACCGGTCTTGTTATTGTGGCTCCAATCAAAAATTCAAAGTCGAATGCTTGGGTGTTCCTTAAACCATTTACAGTAGAGATGTGGTGTGTTACCTCAGCGTCCTTTTTTATGATTGGCGCAGTCATATGGCTTCTTGAGCATCGAGTAAATGATGATTTCCGTGGTCCACCAAAGAGGCAGCTAGTGACAGTAATACTGTTCAGCTTCTCAACATTGTTTAAAACAAATCAGGAAGATACTGTAAGTCCACTTGGACGTATGGTAATGGTGGTGTGGCTTTTCTTATTGATGGTTATCACATCAAGCTATACAGCTAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACTAGTGAACAGCCAATTGGCTACCAGGTAGGATCGTTTGCGTATAGCTATCTGACCGAGAGTCTTTACCTTCCACGATCGAGGCTTGTACCTCTAGGCTCTCCCGAAGAGTATGAATCGGCACTGCTGAAGGGGCCATTCAAAAAAGGAGGGGTGGCGGCTATTGTAGACGAACTTCCATATATGGAGTTATTCTTATCAGGGAGGAACGATTTCGGAATGGTCGGGCAGCCATTCACCAAGAGTGGATGGGGATTTGCTTTCCAGAGAGGATCTCCACTTGCGATAGACATTTCAACTGCAATTCTAAAGCTATCCGAGAATGGAATGCTTCAGAAGATCCATGAGAAGTGGTTTTGCAAGATGGGTTGTCCTGGAGAGAGGAGAAGGAAATCTGAGCCTAACCAACTTCACTTGGTCAGCTTCTGGGGTCTATATCTGTTGTGCGGTGCCTTTTCACTCGCTGCGCTTTTTATATTTTTGCTCCGCATAGTTCGACAATTCGCTCGCTACATACGACAACAGAAGGAATCTTCTCAGGCAGAGTTGGTATCATCAAATTCAAACTCAAACTGGACTCAGGTTATATACAAGTTTATCGACTTTGTCGATGAGAAGGAAGAGGCCATTAAGAGACTTTTTCGAAAGAATGATACTCAGAATCAGGCTAACTGA 2736 40.97 MESLLILTLIGWVFLAGSACCQRPAVVNIGAVFTFDSVIGRAAKVAMEAAISDVNADPFILNGTKLNLVMADTHCNVLMGSIGAFQVLEKDVVAIVGPQSSVVAHMVLQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDSYQMTAMAELIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKKMFKISYKIPLPSQFNLSEITDILNKSKLLGPRIYVVHVNPDPRLSIFKIAHQLNMMTSGYVWLATDWLSTTLDSILPVHQTSLNILQGVVVLRQHTPESSRKTALWSRLRKMLPEGSRNSSLNVYALSAYDTIQVVARSIDKFLNEGRSITFSLKSKFHDLNTSKMPWGKLKIFDDGAFLLSILLQTKFTGLSGQIEFNSDRNIVNRGYEVINIDQTGLRKVGFWSNITGFAIQSPETLKQKRISYTHLNQTLGNVTWPGGKTERPRGWVIADNERPLIIGVPLRVSFIEFVTAINGSDRNIEGYCIDLFNEARKLVPYDVPYRFIPFGNGHSNPSYNDLVKKVADGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTVEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILFSFSTLFKTNQEDTVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITSEQPIGYQVGSFAYSYLTESLYLPRSRLVPLGSPEEYESALLKGPFKKGGVAAIVDELPYMELFLSGRNDFGMVGQPFTKSGWGFAFQRGSPLAIDISTAILKLSENGMLQKIHEKWFCKMGCPGERRRKSEPNQLHLVSFWGLYLLCGAFSLAALFIFLLRIVRQFARYIRQQKESSQAELVSSNSNSNWTQVIYKFIDFVDEKEEAIKRLFRKNDTQNQAN 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40164506 40169149 + Lag0009545.1 Lac9g2058 620984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2058 911 SMART GluR_14 465 808 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac9g2058 911 PIRSF IGluLR_plant 1 911 IPR017103 -
Lac9g2058 911 Pfam Ligated ion channel L-glutamate- and glycine-binding site 480 567 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac9g2058 911 SUPERFAMILY Periplasmic binding protein-like I 20 456 IPR028082 -
Lac9g2058 911 Pfam Receptor family ligand binding region 44 401 IPR001828 -
Lac9g2058 911 FunFam Glutamate receptor 142 298 - -
Lac9g2058 911 Gene3D - 45 392 - -
Lac9g2058 911 Gene3D - 754 813 - -
Lac9g2058 911 Coils Coil 890 910 - -
Lac9g2058 911 FunFam Glutamate receptor 576 706 - -
Lac9g2058 911 Gene3D - 576 708 - -
Lac9g2058 911 Pfam Ligand-gated ion channel 585 837 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac9g2058 911 FunFam Glutamate receptor 702 810 - -
Lac9g2058 911 CDD PBP1_GABAb_receptor_plant 28 417 IPR044440 -
Lac9g2058 911 FunFam Glutamate receptor 459 576 - -
Lac9g2058 911 SUPERFAMILY Periplasmic binding protein-like II 439 806 - -
Lac9g2058 911 Gene3D - 473 575 - -
Lac9g2058 911 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 869 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lac9g2058 911 CDD GluR_Plant 462 806 - -
Lac9g2058 911 Gene3D - 142 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac9g2058 Lac-Chr9:40164506 Lac9g2059 Lac-Chr9:40186303 1.10E-255 tandem
Lac12g0465 Lac-Chr12:5104674 Lac9g2058 Lac-Chr9:40164506 6.60E-229 transposed
Lac1g3096 Lac-Chr1:51418323 Lac9g2058 Lac-Chr9:40164506 2.60E-239 transposed
Lac2g0067 Lac-Chr2:476672 Lac9g2058 Lac-Chr9:40164506 3.00E-244 transposed
Lac6g0126 Lac-Chr6:1037484 Lac9g2058 Lac-Chr9:40164506 6.60E-134 transposed
Lac12g0601 Lac-Chr12:6408862 Lac9g2058 Lac-Chr9:40164506 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2058 K05387 - csv:101215715 1654.42