Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2059 | ATGGAGGTGTTTTGGATTTGGAGGAGTGGCCATTGGGTAAAAACCAGAGTGCTGCTATTTGCATTGTTCTTTTGGATGTGGATGCCTTTGGGAGTGATTGGTGTCTCTCAAAACACAAGTGTTTCTTCTTCAAATCCGAGGGTGTTGAACATTGGAGTTTTGTTCACTCTCGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCCGTGGACGATGTCAATGCCGATAAAAGCATTCTTCATGGAACAAAGCTGAACATGATCTTACATGACACGAACTGCAGTGGATTTCTTGGAACTGTGGAAGCCTTGCAGCTAATGGAAGATGAAGTAGTTGCTGCTATTGGGCCACAATCCTCAGGCATCGCTCATGTCATATCCCATGTTATTAATGAACTCCATATACCGCTTCTATCATTTGGAGCTACAGATCCTACTTTGTCCGCACTACAATACCCGTATTTCGTTCGGACCACACAGAGTGATTACTTCCAGATGAATGCCATTGCTGATCTGGTAGATTATTTTAAATGGAGAGAGGTCATTGCCATCTTTGTAGATGATGATAATGGCAGAAGCGGAATATCAGCACTGAGCGATGCCTTGGCGAAGAAGCGAGCTAGGATCTCTTATAAGGCTGCCTTCTCTCCTGGATCACCCACTAGCACGATAAGTGACTTGTTGGTTTCAGTAAACCTCATGGAATCTCGGGTGTATGTTGTACATGTTAACCCTGACACTGGTTTATCAGTATTTTCAATTGCTAAGAAACTTCAGATGATGGGCAGTGGCTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAATCCTGATATAATGAATCAGTTACAAGGGGTTGTTGCTCTTCGTCACCACACCCCCGACAGCGATTTGAAGAAAAACTTCGTCTCCAAGTGGAAGAATCTCAAATACAAGAGGAGTTCAAACTTCAACTCTTATGCACTCTTTGCATATGACTCTGTTTGGTTAGCAGCTCATGCTCTCGACACATTTTTTAAAGAAGGTGGAAATATATCCTTTTCCAGTGACCCAAAGTTACGTGAAAACAATGGAAGCATGCTGCACTTAACATCACTTCGAGTTTTTAATGGCGGCGAACAACTTCTACAGACAATTAAGAGAACGAACTTCACGGGTGTTAGTGGACGGATTCAATTTGGTGATGACAGAAATTTGATTCATCCAGCCTACGATATTCTGAACATTGGAGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGACAACTTATATCCAAAGCCTCTTAATGCTTCCCCAAATAACCATCTGTACAGTGTAATATGGCCAGGTGAAGTAACGACCGTTCCTCGAGGATGGGTGTTCCCACACAACGGGAAACCGTTACAAATTTTAGTACCTAACCGTGTGAGTTACAAAGCCTTTGTGTCTAAAGACAAGAATCCTCCAGGAGTCAAAGGATATTGTATAGATGTCTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACACATATATATTATATGGAGATGGAAAGGACACTCCTGAGTATAGCCATCTTGTGTATGAAGTTTCACAGAATAAATATGATGCAGCTGTTGGTGATATTACGATTGTAACGAATAGGACTAAGATTGTGGACTTCACACAACCATTTATGGAGTCAGGACTCGTCGTAGTTACTGTCGTCAAAGAGCAGCAGTCCAGTCCATGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCAATATTCTTTATTTTTGTTGGAGCAGTTGTTTGGATTCTCGAGCACCGGACTAATGAAGAGTTCCGTGGTCCACCAAGGCAACAACTAATAACAATATTTTGGTTTAGTTTCTCAACGATGTTCTTTTCTCATAAGGAAAACACCGTAAGCACCCTTGGACGATTGGTGCTAATAATATGGCTCTTCATTGTGTTAATTATCAATTCGAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTGCAGCAGCTGACGTCAAAGATTGAAGGGATTGATAGCTTAATTTCTACCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAACTATCTGATTGATGAGCTGAATATAGCAGCATCTAGGATCATTAAGTTGAAAAATCAAGAGGAATATGTTGATGCTCTTCGGCGTGGACCTGCGAATGGCGGGGTAGCTGCCATTGTAGATGAGCTTCCTTATGTTGAGCTTTTCTTGTCTGGCACCAATTGCGAATACAGGACGGTCGGACAGGAGTTCACGAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCTGTTGATTTGTCCACAGCCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATTCATGACAAATGGCTTTCACGAACCGAGTGTTCGATGAGCCTCAACCAAGCCGACGTAAACCAACTATCACTGAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTGCCTGCTTTGCTGCTCTTTTGATATTCTTCTTTAGAGTACTACTCCAATATCGAAGATCTACCCCGGAAACTCAGCCTGAAGTCGAGGAGGTCGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACGAGCTTCATGCACTTTGTAGATCAAAAAGAAGTCAAAAAGTCTAGAAGAAAATCCACAGATACCAAACAAGCTAGCCAAAGCTCAGAGAGTTACCATGATTCACCACCTCATTAG | 2808 | 42.45 | MEVFWIWRSGHWVKTRVLLFALFFWMWMPLGVIGVSQNTSVSSSNPRVLNIGVLFTLDSVIGRSAQPAILAAVDDVNADKSILHGTKLNMILHDTNCSGFLGTVEALQLMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPTLSALQYPYFVRTTQSDYFQMNAIADLVDYFKWREVIAIFVDDDNGRSGISALSDALAKKRARISYKAAFSPGSPTSTISDLLVSVNLMESRVYVVHVNPDTGLSVFSIAKKLQMMGSGYVWIATDWLPSFLDSFETNNPDIMNQLQGVVALRHHTPDSDLKKNFVSKWKNLKYKRSSNFNSYALFAYDSVWLAAHALDTFFKEGGNISFSSDPKLRENNGSMLHLTSLRVFNGGEQLLQTIKRTNFTGVSGRIQFGDDRNLIHPAYDILNIGGTGSRRIGYWSNYSGLSTIAPDNLYPKPLNASPNNHLYSVIWPGEVTTVPRGWVFPHNGKPLQILVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHTYILYGDGKDTPEYSHLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKEQQSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFIVLIINSSYTASLTSILTVQQLTSKIEGIDSLISTTDAIGVQEGSFALNYLIDELNIAASRIIKLKNQEEYVDALRRGPANGGVAAIVDELPYVELFLSGTNCEYRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQADVNQLSLSSFWGLFLICGIACFAALLIFFFRVLLQYRRSTPETQPEVEEVEPVRTRRLSRTTSFMHFVDQKEVKKSRRKSTDTKQASQSSESYHDSPPH | 935 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 40186303 | 40190678 | + | Lag0009546.1 | Lac9g2059 | 620985 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2059 | 935 | Gene3D | - | 593 | 722 | - | - | |
Lac9g2059 | 935 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 50 | 914 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Lac9g2059 | 935 | SUPERFAMILY | Periplasmic binding protein-like II | 459 | 825 | - | - | |
Lac9g2059 | 935 | Pfam | Ligand-gated ion channel | 603 | 857 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lac9g2059 | 935 | Gene3D | - | 477 | 592 | - | - | |
Lac9g2059 | 935 | FunFam | Glutamate receptor | 478 | 594 | - | - | |
Lac9g2059 | 935 | SUPERFAMILY | Periplasmic binding protein-like I | 43 | 475 | IPR028082 | - | |
Lac9g2059 | 935 | MobiDBLite | consensus disorder prediction | 921 | 935 | - | - | |
Lac9g2059 | 935 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 62 | 78 | - | - | |
Lac9g2059 | 935 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 253 | 276 | - | - | |
Lac9g2059 | 935 | PRINTS | Metabotropic gamma-aminobutyric acid type B receptor signature | 122 | 150 | - | - | |
Lac9g2059 | 935 | FunFam | Glutamate receptor | 720 | 828 | - | - | |
Lac9g2059 | 935 | FunFam | Glutamate receptor | 594 | 724 | - | - | |
Lac9g2059 | 935 | Gene3D | - | 68 | 412 | - | - | |
Lac9g2059 | 935 | PIRSF | IGluLR_plant | 13 | 934 | IPR017103 | - | |
Lac9g2059 | 935 | SMART | GluR_14 | 484 | 826 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lac9g2059 | 935 | CDD | GluR_Plant | 481 | 824 | - | - | |
Lac9g2059 | 935 | CDD | PBP1_GABAb_receptor_plant | 50 | 438 | IPR044440 | - | |
Lac9g2059 | 935 | Gene3D | - | 723 | 828 | - | - | |
Lac9g2059 | 935 | Gene3D | - | 164 | 437 | - | - | |
Lac9g2059 | 935 | MobiDBLite | consensus disorder prediction | 905 | 935 | - | - | |
Lac9g2059 | 935 | Pfam | Receptor family ligand binding region | 65 | 422 | IPR001828 | - | |
Lac9g2059 | 935 | Pfam | Ligated ion channel L-glutamate- and glycine-binding site | 504 | 585 | IPR019594 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lac9g2059 | 935 | MobiDBLite | consensus disorder prediction | 905 | 920 | - | - | |
Lac9g2059 | 935 | FunFam | Glutamate receptor | 164 | 326 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g0601 | Lac-Chr12:6408862 | Lac9g2059 | Lac-Chr9:40186303 | 8.90E-261 | dispersed | |
Lac2g0067 | Lac-Chr2:476672 | Lac9g2059 | Lac-Chr9:40186303 | 7.60E-272 | dispersed | |
Lac6g0316 | Lac-Chr6:2588662 | Lac9g2059 | Lac-Chr9:40186303 | 3.80E-67 | dispersed | |
Lac6g0568 | Lac-Chr6:4734738 | Lac9g2059 | Lac-Chr9:40186303 | 4.50E-140 | dispersed | |
Lac6g0569 | Lac-Chr6:4747020 | Lac9g2059 | Lac-Chr9:40186303 | 4.00E-133 | dispersed | |
Lac9g2058 | Lac-Chr9:40164506 | Lac9g2059 | Lac-Chr9:40186303 | 1.10E-255 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g2059 | K05387 | - | csv:101215485 | 1655.19 |