Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2059 ATGGAGGTGTTTTGGATTTGGAGGAGTGGCCATTGGGTAAAAACCAGAGTGCTGCTATTTGCATTGTTCTTTTGGATGTGGATGCCTTTGGGAGTGATTGGTGTCTCTCAAAACACAAGTGTTTCTTCTTCAAATCCGAGGGTGTTGAACATTGGAGTTTTGTTCACTCTCGATTCGGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCCGTGGACGATGTCAATGCCGATAAAAGCATTCTTCATGGAACAAAGCTGAACATGATCTTACATGACACGAACTGCAGTGGATTTCTTGGAACTGTGGAAGCCTTGCAGCTAATGGAAGATGAAGTAGTTGCTGCTATTGGGCCACAATCCTCAGGCATCGCTCATGTCATATCCCATGTTATTAATGAACTCCATATACCGCTTCTATCATTTGGAGCTACAGATCCTACTTTGTCCGCACTACAATACCCGTATTTCGTTCGGACCACACAGAGTGATTACTTCCAGATGAATGCCATTGCTGATCTGGTAGATTATTTTAAATGGAGAGAGGTCATTGCCATCTTTGTAGATGATGATAATGGCAGAAGCGGAATATCAGCACTGAGCGATGCCTTGGCGAAGAAGCGAGCTAGGATCTCTTATAAGGCTGCCTTCTCTCCTGGATCACCCACTAGCACGATAAGTGACTTGTTGGTTTCAGTAAACCTCATGGAATCTCGGGTGTATGTTGTACATGTTAACCCTGACACTGGTTTATCAGTATTTTCAATTGCTAAGAAACTTCAGATGATGGGCAGTGGCTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTTGAAACAAATAATCCTGATATAATGAATCAGTTACAAGGGGTTGTTGCTCTTCGTCACCACACCCCCGACAGCGATTTGAAGAAAAACTTCGTCTCCAAGTGGAAGAATCTCAAATACAAGAGGAGTTCAAACTTCAACTCTTATGCACTCTTTGCATATGACTCTGTTTGGTTAGCAGCTCATGCTCTCGACACATTTTTTAAAGAAGGTGGAAATATATCCTTTTCCAGTGACCCAAAGTTACGTGAAAACAATGGAAGCATGCTGCACTTAACATCACTTCGAGTTTTTAATGGCGGCGAACAACTTCTACAGACAATTAAGAGAACGAACTTCACGGGTGTTAGTGGACGGATTCAATTTGGTGATGACAGAAATTTGATTCATCCAGCCTACGATATTCTGAACATTGGAGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATTGCACCAGACAACTTATATCCAAAGCCTCTTAATGCTTCCCCAAATAACCATCTGTACAGTGTAATATGGCCAGGTGAAGTAACGACCGTTCCTCGAGGATGGGTGTTCCCACACAACGGGAAACCGTTACAAATTTTAGTACCTAACCGTGTGAGTTACAAAGCCTTTGTGTCTAAAGACAAGAATCCTCCAGGAGTCAAAGGATATTGTATAGATGTCTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCTCACACATATATATTATATGGAGATGGAAAGGACACTCCTGAGTATAGCCATCTTGTGTATGAAGTTTCACAGAATAAATATGATGCAGCTGTTGGTGATATTACGATTGTAACGAATAGGACTAAGATTGTGGACTTCACACAACCATTTATGGAGTCAGGACTCGTCGTAGTTACTGTCGTCAAAGAGCAGCAGTCCAGTCCATGGGCTTTTCTCAGGCCGTTTACTGTTCAAATGTGGGCTGTCACTGCAATATTCTTTATTTTTGTTGGAGCAGTTGTTTGGATTCTCGAGCACCGGACTAATGAAGAGTTCCGTGGTCCACCAAGGCAACAACTAATAACAATATTTTGGTTTAGTTTCTCAACGATGTTCTTTTCTCATAAGGAAAACACCGTAAGCACCCTTGGACGATTGGTGCTAATAATATGGCTCTTCATTGTGTTAATTATCAATTCGAGCTACACAGCTAGTTTGACGTCGATCTTAACGGTGCAGCAGCTGACGTCAAAGATTGAAGGGATTGATAGCTTAATTTCTACCACAGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGAACTATCTGATTGATGAGCTGAATATAGCAGCATCTAGGATCATTAAGTTGAAAAATCAAGAGGAATATGTTGATGCTCTTCGGCGTGGACCTGCGAATGGCGGGGTAGCTGCCATTGTAGATGAGCTTCCTTATGTTGAGCTTTTCTTGTCTGGCACCAATTGCGAATACAGGACGGTCGGACAGGAGTTCACGAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCTGTTGATTTGTCCACAGCCATTCTTCAACTCTCAGAGAATGGTGATCTTCAAAAGATTCATGACAAATGGCTTTCACGAACCGAGTGTTCGATGAGCCTCAACCAAGCCGACGTAAACCAACTATCACTGAGTAGCTTTTGGGGATTGTTCCTAATTTGTGGCATTGCCTGCTTTGCTGCTCTTTTGATATTCTTCTTTAGAGTACTACTCCAATATCGAAGATCTACCCCGGAAACTCAGCCTGAAGTCGAGGAGGTCGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACGAGCTTCATGCACTTTGTAGATCAAAAAGAAGTCAAAAAGTCTAGAAGAAAATCCACAGATACCAAACAAGCTAGCCAAAGCTCAGAGAGTTACCATGATTCACCACCTCATTAG 2808 42.45 MEVFWIWRSGHWVKTRVLLFALFFWMWMPLGVIGVSQNTSVSSSNPRVLNIGVLFTLDSVIGRSAQPAILAAVDDVNADKSILHGTKLNMILHDTNCSGFLGTVEALQLMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPTLSALQYPYFVRTTQSDYFQMNAIADLVDYFKWREVIAIFVDDDNGRSGISALSDALAKKRARISYKAAFSPGSPTSTISDLLVSVNLMESRVYVVHVNPDTGLSVFSIAKKLQMMGSGYVWIATDWLPSFLDSFETNNPDIMNQLQGVVALRHHTPDSDLKKNFVSKWKNLKYKRSSNFNSYALFAYDSVWLAAHALDTFFKEGGNISFSSDPKLRENNGSMLHLTSLRVFNGGEQLLQTIKRTNFTGVSGRIQFGDDRNLIHPAYDILNIGGTGSRRIGYWSNYSGLSTIAPDNLYPKPLNASPNNHLYSVIWPGEVTTVPRGWVFPHNGKPLQILVPNRVSYKAFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPHTYILYGDGKDTPEYSHLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKEQQSSPWAFLRPFTVQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFIVLIINSSYTASLTSILTVQQLTSKIEGIDSLISTTDAIGVQEGSFALNYLIDELNIAASRIIKLKNQEEYVDALRRGPANGGVAAIVDELPYVELFLSGTNCEYRTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSMSLNQADVNQLSLSSFWGLFLICGIACFAALLIFFFRVLLQYRRSTPETQPEVEEVEPVRTRRLSRTTSFMHFVDQKEVKKSRRKSTDTKQASQSSESYHDSPPH 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40186303 40190678 + Lag0009546.1 Lac9g2059 620985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2059 935 Gene3D - 593 722 - -
Lac9g2059 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 50 914 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lac9g2059 935 SUPERFAMILY Periplasmic binding protein-like II 459 825 - -
Lac9g2059 935 Pfam Ligand-gated ion channel 603 857 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac9g2059 935 Gene3D - 477 592 - -
Lac9g2059 935 FunFam Glutamate receptor 478 594 - -
Lac9g2059 935 SUPERFAMILY Periplasmic binding protein-like I 43 475 IPR028082 -
Lac9g2059 935 MobiDBLite consensus disorder prediction 921 935 - -
Lac9g2059 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 62 78 - -
Lac9g2059 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 253 276 - -
Lac9g2059 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 122 150 - -
Lac9g2059 935 FunFam Glutamate receptor 720 828 - -
Lac9g2059 935 FunFam Glutamate receptor 594 724 - -
Lac9g2059 935 Gene3D - 68 412 - -
Lac9g2059 935 PIRSF IGluLR_plant 13 934 IPR017103 -
Lac9g2059 935 SMART GluR_14 484 826 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac9g2059 935 CDD GluR_Plant 481 824 - -
Lac9g2059 935 CDD PBP1_GABAb_receptor_plant 50 438 IPR044440 -
Lac9g2059 935 Gene3D - 723 828 - -
Lac9g2059 935 Gene3D - 164 437 - -
Lac9g2059 935 MobiDBLite consensus disorder prediction 905 935 - -
Lac9g2059 935 Pfam Receptor family ligand binding region 65 422 IPR001828 -
Lac9g2059 935 Pfam Ligated ion channel L-glutamate- and glycine-binding site 504 585 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac9g2059 935 MobiDBLite consensus disorder prediction 905 920 - -
Lac9g2059 935 FunFam Glutamate receptor 164 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0601 Lac-Chr12:6408862 Lac9g2059 Lac-Chr9:40186303 8.90E-261 dispersed
Lac2g0067 Lac-Chr2:476672 Lac9g2059 Lac-Chr9:40186303 7.60E-272 dispersed
Lac6g0316 Lac-Chr6:2588662 Lac9g2059 Lac-Chr9:40186303 3.80E-67 dispersed
Lac6g0568 Lac-Chr6:4734738 Lac9g2059 Lac-Chr9:40186303 4.50E-140 dispersed
Lac6g0569 Lac-Chr6:4747020 Lac9g2059 Lac-Chr9:40186303 4.00E-133 dispersed
Lac9g2058 Lac-Chr9:40164506 Lac9g2059 Lac-Chr9:40186303 1.10E-255 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2059 K05387 - csv:101215485 1655.19