Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2062 ATGCCAGCCGGGATTATGACACCGGCCAGAAACATGCCGCCGATGATTGGAAGAAATGGGAATAATGTTGGTGGATTTGGCTCTACTTCTGGACTTGTTCTTTCTCAGCCAAGCATTTTTGACGACAGTAAGCTCCTCCCCTTAGACATGCCTCAAAACACTTCCGAAAGCGATCTTGCTCGAATTCGAGACGACGACTTTGACAGCGCCACTAAATCCGGCAGCGACAACAACCATGAACTCGCCTCCGGGGACGACCAGGACCCTCGTCCTAAAAAGAAACGCTACCATCGTCATACCCAACATCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGGAAGGAATTAAGCAGGGAATTAGGGTTAGAGCCGTTGCAAGTCAAATTCTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGCGGCATGAGAACACCCAACTTCGAACAGAAAATGAGAAGCTTCGAGCTGATAACATGAGATACAGAGAAGCCCTAAGCAATGCCTCATGCCCTAATTGTGGTGGCCCTACCGCCATCGGCGAAATGTCTTTCGACGAACATCATCTTAGACTCGAAAATGCCCGTCTCCGCGAAGAGATCGATCGCATTTCAGCAATAGCTGCAAAATACGTGGGGAAACCAGTGGTGAACTACCCTCTCCTTTCTCCACCAGTTCCATCTCGCCCACTCGAGCTCGGAATGGGCAACTTCGGACCCCAACCAGGCCTCGGAGGAGACATCTATGGCTCGGCCGGTGACCTCATCCGATCCATCAGCGCCCCGACCGAGGCCGATAAGCCAATGATCATCGAGCTCGCAGTTGCAGCCATGGAAGAGCTGACTAGAATGGCTCAAATGGGCGAGCCCTTGTGGATGACTAGCCTTGATGGGTCCACCAATGTGCTGAATGAAGATGAGTACTTGAGAACGTTTCCTAGAGGCATTGGGCCTAAGCCATCTGGGTTTAAATGTGAAGCCTCTCGTGAATCTGCTGTTGTCATCATGAATCATATTAACCTCGTTGAGATTCTCATGGACGTGAATCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTGTTATCAACCGGAGTTGCTGGAAATTACAATGGAGCTTTGCAAGTGATGACGTCGGAATTCCAAGTTCCATCGCCACTGGTTCCGACTCGGGAAAGCTACTACGTTAGATACTGCAAACAGCACGCCGACGGGACGTGGGCAGTGGTCGATGTTTCATTGGATGATCTGCGCCCTACCCCTGGACTTAGATGCAGAAGAAGACCTTCAGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCAAAGGTTACATGGGTTGAGCATGTAGAGGTTGATGATAGAGGAGTTCATAATCTTTACAAGCAGTTGGTGAGCTCTGGCCAAGCTTTTGGGGCCAAGCGTTGGGTTACAACTTTAGATCGCCAATGTGAACGACTTGCCAGTGCCATGGCCACCAACATACCTACCGGTGATGTTGGAGTGATAACGAATCAAGAAGGGAGAAAGAGCATGTTGAAGTTGGCTGAGAGGATGGTGATAAGCTTCTGTGCTGGAGTGAGCGCCTCCACAACCCACACGTGGACTACTCTATCGGGTACGGGTGCGGACGACGTTCGGGTCATGACCCGAAAGAGCATCGACGACCCGGGAAGACCTCCTGGTATCGTCCTGAGTGCTGCAACTTCCTTTTGGCTCCCCGTTCCACCCAAGAGAATCTTCGATTTCCTTCGAGATGAAAACTCCCGCAGCGAGTGGGACATTCTTTCCAACGGCGGAGTAGTTCAAGAAATGGCTCACATCGCCAACGGCCGCGACACTGGCAACTGCGTTTCTCTGCTGCGTGTAAACAGCGCAAATTCAAGCCAAAGCAACATGCTAATCCTGCAAGAAAGCTGCACAGACCCAACAGCCTCATTCGTCATCTACGCTCCCGTCGACATCGTCGCAATGAACGTCGTCCTCAACGGCGGCGACCCCGACTACGTGGCACTTCTCCCCTCCGGCTTCGCCATTCTCCCCGACGGCGGCGGCGGAGAGACCGTCTCCGGTGGTGGGTCCCTCCTGACGGTTGCGTTTCAGATTTTGGTGGACTCGGTGCCAACGGCCAAACTGTCGCTTGGGTCGGTGGCAACGGTCAACAACCTGATTGCGTGTACGGTGGAGAGGATCAAAGCGTCGTTGTCATGCGAGACTGCTTAA 2274 51.32 MPAGIMTPARNMPPMIGRNGNNVGGFGSTSGLVLSQPSIFDDSKLLPLDMPQNTSESDLARIRDDDFDSATKSGSDNNHELASGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPSRPLELGMGNFGPQPGLGGDIYGSAGDLIRSISAPTEADKPMIIELAVAAMEELTRMAQMGEPLWMTSLDGSTNVLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYYVRYCKQHADGTWAVVDVSLDDLRPTPGLRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGGGETVSGGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCETA 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40201422 40205916 - Lag0009549.1 Lac9g2062 620988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2062 757 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677(InterPro)
Lac9g2062 757 SUPERFAMILY Bet v1-like 274 505 - -
Lac9g2062 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 73 755 IPR042160 -
Lac9g2062 757 SMART HOX_1 91 154 IPR001356 GO:0003677(InterPro)
Lac9g2062 757 Pfam Homeodomain 93 149 IPR001356 GO:0003677(InterPro)
Lac9g2062 757 Pfam START domain 284 503 IPR002913 GO:0008289(InterPro)
Lac9g2062 757 SUPERFAMILY Bet v1-like 522 749 - -
Lac9g2062 757 FunFam Homeobox-leucine zipper protein HDG1 78 166 - -
Lac9g2062 757 FunFam Homeobox-leucine zipper protein GLABRA 2 283 502 - -
Lac9g2062 757 SUPERFAMILY Homeodomain-like 81 150 IPR009057 -
Lac9g2062 757 Gene3D - 333 502 IPR023393 -
Lac9g2062 757 Gene3D - 79 167 - -
Lac9g2062 757 Coils Coil 144 176 - -
Lac9g2062 757 MobiDBLite consensus disorder prediction 58 92 - -
Lac9g2062 757 CDD homeodomain 93 151 IPR001356 GO:0003677(InterPro)
Lac9g2062 757 SMART START_1 283 503 IPR002913 GO:0008289(InterPro)
Lac9g2062 757 MobiDBLite consensus disorder prediction 1 22 - -
Lac9g2062 757 ProSiteProfiles START domain profile. 274 506 IPR002913 GO:0008289(InterPro)
Lac9g2062 757 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac9g2062 757 CDD START_ArGLABRA2_like 278 502 - -
Lac9g2062 757 MobiDBLite consensus disorder prediction 45 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0711 Lac-Chr10:5486944 Lac9g2062 Lac-Chr9:40201422 2.30E-280 dispersed
Lac4g2887 Lac-Chr4:47334342 Lac9g2062 Lac-Chr9:40201422 3.90E-126 dispersed
Lac5g2912 Lac-Chr5:47267150 Lac9g2062 Lac-Chr9:40201422 5.60E-192 dispersed
Lac7g0267 Lac-Chr7:2084203 Lac9g2062 Lac-Chr9:40201422 4.00E-195 dispersed
Lac1g3228 Lac-Chr1:52245567 Lac9g2062 Lac-Chr9:40201422 1.10E-282 wgd
Lac12g0611 Lac-Chr12:6484005 Lac9g2062 Lac-Chr9:40201422 0.00E+00 wgd
Lac2g1376 Lac-Chr2:11625358 Lac9g2062 Lac-Chr9:40201422 8.10E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24454 PF01852 START 2.00E-58 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2062 K09338 - csv:101214763 1428.69