Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2062 | ATGCCAGCCGGGATTATGACACCGGCCAGAAACATGCCGCCGATGATTGGAAGAAATGGGAATAATGTTGGTGGATTTGGCTCTACTTCTGGACTTGTTCTTTCTCAGCCAAGCATTTTTGACGACAGTAAGCTCCTCCCCTTAGACATGCCTCAAAACACTTCCGAAAGCGATCTTGCTCGAATTCGAGACGACGACTTTGACAGCGCCACTAAATCCGGCAGCGACAACAACCATGAACTCGCCTCCGGGGACGACCAGGACCCTCGTCCTAAAAAGAAACGCTACCATCGTCATACCCAACATCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGGAAGGAATTAAGCAGGGAATTAGGGTTAGAGCCGTTGCAAGTCAAATTCTGGTTCCAAAACAAACGCACTCAAATGAAGAATCAACACGAGCGGCATGAGAACACCCAACTTCGAACAGAAAATGAGAAGCTTCGAGCTGATAACATGAGATACAGAGAAGCCCTAAGCAATGCCTCATGCCCTAATTGTGGTGGCCCTACCGCCATCGGCGAAATGTCTTTCGACGAACATCATCTTAGACTCGAAAATGCCCGTCTCCGCGAAGAGATCGATCGCATTTCAGCAATAGCTGCAAAATACGTGGGGAAACCAGTGGTGAACTACCCTCTCCTTTCTCCACCAGTTCCATCTCGCCCACTCGAGCTCGGAATGGGCAACTTCGGACCCCAACCAGGCCTCGGAGGAGACATCTATGGCTCGGCCGGTGACCTCATCCGATCCATCAGCGCCCCGACCGAGGCCGATAAGCCAATGATCATCGAGCTCGCAGTTGCAGCCATGGAAGAGCTGACTAGAATGGCTCAAATGGGCGAGCCCTTGTGGATGACTAGCCTTGATGGGTCCACCAATGTGCTGAATGAAGATGAGTACTTGAGAACGTTTCCTAGAGGCATTGGGCCTAAGCCATCTGGGTTTAAATGTGAAGCCTCTCGTGAATCTGCTGTTGTCATCATGAATCATATTAACCTCGTTGAGATTCTCATGGACGTGAATCAATGGTCGACTTTATTTTCTGGAATTGTGTCTAGAGCTATGACACTTGAAGTGTTATCAACCGGAGTTGCTGGAAATTACAATGGAGCTTTGCAAGTGATGACGTCGGAATTCCAAGTTCCATCGCCACTGGTTCCGACTCGGGAAAGCTACTACGTTAGATACTGCAAACAGCACGCCGACGGGACGTGGGCAGTGGTCGATGTTTCATTGGATGATCTGCGCCCTACCCCTGGACTTAGATGCAGAAGAAGACCTTCAGGTTGTTTGATCCAAGAAATGCCAAATGGTTATTCAAAGGTTACATGGGTTGAGCATGTAGAGGTTGATGATAGAGGAGTTCATAATCTTTACAAGCAGTTGGTGAGCTCTGGCCAAGCTTTTGGGGCCAAGCGTTGGGTTACAACTTTAGATCGCCAATGTGAACGACTTGCCAGTGCCATGGCCACCAACATACCTACCGGTGATGTTGGAGTGATAACGAATCAAGAAGGGAGAAAGAGCATGTTGAAGTTGGCTGAGAGGATGGTGATAAGCTTCTGTGCTGGAGTGAGCGCCTCCACAACCCACACGTGGACTACTCTATCGGGTACGGGTGCGGACGACGTTCGGGTCATGACCCGAAAGAGCATCGACGACCCGGGAAGACCTCCTGGTATCGTCCTGAGTGCTGCAACTTCCTTTTGGCTCCCCGTTCCACCCAAGAGAATCTTCGATTTCCTTCGAGATGAAAACTCCCGCAGCGAGTGGGACATTCTTTCCAACGGCGGAGTAGTTCAAGAAATGGCTCACATCGCCAACGGCCGCGACACTGGCAACTGCGTTTCTCTGCTGCGTGTAAACAGCGCAAATTCAAGCCAAAGCAACATGCTAATCCTGCAAGAAAGCTGCACAGACCCAACAGCCTCATTCGTCATCTACGCTCCCGTCGACATCGTCGCAATGAACGTCGTCCTCAACGGCGGCGACCCCGACTACGTGGCACTTCTCCCCTCCGGCTTCGCCATTCTCCCCGACGGCGGCGGCGGAGAGACCGTCTCCGGTGGTGGGTCCCTCCTGACGGTTGCGTTTCAGATTTTGGTGGACTCGGTGCCAACGGCCAAACTGTCGCTTGGGTCGGTGGCAACGGTCAACAACCTGATTGCGTGTACGGTGGAGAGGATCAAAGCGTCGTTGTCATGCGAGACTGCTTAA | 2274 | 51.32 | MPAGIMTPARNMPPMIGRNGNNVGGFGSTSGLVLSQPSIFDDSKLLPLDMPQNTSESDLARIRDDDFDSATKSGSDNNHELASGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPSRPLELGMGNFGPQPGLGGDIYGSAGDLIRSISAPTEADKPMIIELAVAAMEELTRMAQMGEPLWMTSLDGSTNVLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVPSPLVPTRESYYVRYCKQHADGTWAVVDVSLDDLRPTPGLRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGGGETVSGGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCETA | 757 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 40201422 | 40205916 | - | Lag0009549.1 | Lac9g2062 | 620988 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2062 | 757 | ProSiteProfiles | 'Homeobox' domain profile. | 90 | 150 | IPR001356 | GO:0003677(InterPro) | |
Lac9g2062 | 757 | SUPERFAMILY | Bet v1-like | 274 | 505 | - | - | |
Lac9g2062 | 757 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 73 | 755 | IPR042160 | - | |
Lac9g2062 | 757 | SMART | HOX_1 | 91 | 154 | IPR001356 | GO:0003677(InterPro) | |
Lac9g2062 | 757 | Pfam | Homeodomain | 93 | 149 | IPR001356 | GO:0003677(InterPro) | |
Lac9g2062 | 757 | Pfam | START domain | 284 | 503 | IPR002913 | GO:0008289(InterPro) | |
Lac9g2062 | 757 | SUPERFAMILY | Bet v1-like | 522 | 749 | - | - | |
Lac9g2062 | 757 | FunFam | Homeobox-leucine zipper protein HDG1 | 78 | 166 | - | - | |
Lac9g2062 | 757 | FunFam | Homeobox-leucine zipper protein GLABRA 2 | 283 | 502 | - | - | |
Lac9g2062 | 757 | SUPERFAMILY | Homeodomain-like | 81 | 150 | IPR009057 | - | |
Lac9g2062 | 757 | Gene3D | - | 333 | 502 | IPR023393 | - | |
Lac9g2062 | 757 | Gene3D | - | 79 | 167 | - | - | |
Lac9g2062 | 757 | Coils | Coil | 144 | 176 | - | - | |
Lac9g2062 | 757 | MobiDBLite | consensus disorder prediction | 58 | 92 | - | - | |
Lac9g2062 | 757 | CDD | homeodomain | 93 | 151 | IPR001356 | GO:0003677(InterPro) | |
Lac9g2062 | 757 | SMART | START_1 | 283 | 503 | IPR002913 | GO:0008289(InterPro) | |
Lac9g2062 | 757 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lac9g2062 | 757 | ProSiteProfiles | START domain profile. | 274 | 506 | IPR002913 | GO:0008289(InterPro) | |
Lac9g2062 | 757 | ProSitePatterns | 'Homeobox' domain signature. | 125 | 148 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lac9g2062 | 757 | CDD | START_ArGLABRA2_like | 278 | 502 | - | - | |
Lac9g2062 | 757 | MobiDBLite | consensus disorder prediction | 45 | 101 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0711 | Lac-Chr10:5486944 | Lac9g2062 | Lac-Chr9:40201422 | 2.30E-280 | dispersed | |
Lac4g2887 | Lac-Chr4:47334342 | Lac9g2062 | Lac-Chr9:40201422 | 3.90E-126 | dispersed | |
Lac5g2912 | Lac-Chr5:47267150 | Lac9g2062 | Lac-Chr9:40201422 | 5.60E-192 | dispersed | |
Lac7g0267 | Lac-Chr7:2084203 | Lac9g2062 | Lac-Chr9:40201422 | 4.00E-195 | dispersed | |
Lac1g3228 | Lac-Chr1:52245567 | Lac9g2062 | Lac-Chr9:40201422 | 1.10E-282 | wgd | |
Lac12g0611 | Lac-Chr12:6484005 | Lac9g2062 | Lac-Chr9:40201422 | 0.00E+00 | wgd | |
Lac2g1376 | Lac-Chr2:11625358 | Lac9g2062 | Lac-Chr9:40201422 | 8.10E-116 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24454 | PF01852 | START | 2.00E-58 | CL0209 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g2062 | K09338 | - | csv:101214763 | 1428.69 |