Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2066 ATGTTATCATGTTCTTTATCTAAGGACTCGTTCGTTAGCTATGCCAAAAGTGAGGCTTCCAGAGAAATTGATCTCGAGAAGGGAACGCGAGTTCTGCGGAGCAATTCTGACATGGGAATGGAGGCTTTCAATAAGCAGATACAAGAGGTTGAGGTACAAATAGACAAGCTCTCTGGGCTTCTTATTAAACTGAAGGATGCTAATGAGGAATCTAAGTCTGTTACAAAAGCATCAGAGATGAAAGCTATCAAGAAGCGTATGGAAAAGGATATCGACGAAGTGGGAAAAATTGCACGTAATGTCAAAGGGAAGCTGGAAGCTGTAAATAAAGATAACTTAACCAATAGGCAGAAGCCTGGATGCGAGAAGGGATCAGCCATTGACAGAGCAAGAATGAACGTGACAAATGCCTTGACAAAAAAGTTAAAGGATCTGATGATAGAATTTCAGACCCTTCGTCAAAGAATTCAAGATGAATACCGTGAAGTCGTGGAAAGACGAGTGATTACAGTTACTGGTACCAGACCAGATGAGACGATGATTGATCACCTTATAGAAACTGGAAACAGTGAGCAAATATTCCAGAATGCATTTGAACAAATGGGACGAGGACAGGTTATCAGTACCGTGGAAGAAATTCAAGAGCGACACGACGCAGTGAAAGAAATCGAGAAAAGGCTCTCGGAATTGCATCAGATCTACCTTGACATGGCAGTTTTAGTGGAGGCTCAGGCTGAAATTTTGGATAACATAGAAAATCAGGTTGGTCCTACTTCTAACTCCTGGTATGGACAGTTTGTGTTCGTCATTCATACAAGGTGTCGATGTGATCTCGCCCAGGTTATAAGAATGTTGTCAATCATGTCTGTAGATTACAACCTTGCTCCAAAATGCAGAGGTCGCCTTGGAAATGGATGTGCATTGCCATGCCATTATTGTTCTTCTGTTTATAATATCTGTTGTAGTAACGAATGCAGTCGACCACGTTCGAACGGGAACCGATGCACTTCAGACAGCGAAGAGCTTACAGAAGAGATCAAGAAAATGCATGATGATCTCCATCATTTTGCTGCTGGTTATAGCAATCATAATTGTCCTCTCAGTGTTGAAGCCATGGAAGAAGTAACTGATGGAAATGATGCCAAGAAGTGA 1152 41.75 MLSCSLSKDSFVSYAKSEASREIDLEKGTRVLRSNSDMGMEAFNKQIQEVEVQIDKLSGLLIKLKDANEESKSVTKASEMKAIKKRMEKDIDEVGKIARNVKGKLEAVNKDNLTNRQKPGCEKGSAIDRARMNVTNALTKKLKDLMIEFQTLRQRIQDEYREVVERRVITVTGTRPDETMIDHLIETGNSEQIFQNAFEQMGRGQVISTVEEIQERHDAVKEIEKRLSELHQIYLDMAVLVEAQAEILDNIENQVGPTSNSWYGQFVFVIHTRCRCDLAQVIRMLSIMSVDYNLAPKCRGRLGNGCALPCHYCSSVYNICCSNECSRPRSNGNRCTSDSEELTEEIKKMHDDLHHFAAGYSNHNCPLSVEAMEEVTDGNDAKK 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40297547 40300062 + Lag0009553.1 Lac9g2066 620992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2066 383 SUPERFAMILY t-snare proteins 37 258 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lac9g2066 383 SMART tSNARE_6 205 272 IPR000727 -
Lac9g2066 383 PANTHER SYNTAXIN 42 258 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lac9g2066 383 Pfam Syntaxin 43 245 IPR006011 GO:0016020(InterPro)
Lac9g2066 383 CDD SNARE_syntaxin1-like 209 260 - -
Lac9g2066 383 Coils Coil 135 162 - -
Lac9g2066 383 Gene3D - 36 241 - -
Lac9g2066 383 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 255 IPR000727 -
Lac9g2066 383 SMART SynN_4 35 161 IPR006011 GO:0016020(InterPro)
Lac9g2066 383 Coils Coil 40 67 - -
Lac9g2066 383 CDD SynN 40 197 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2321 Lac-Chr1:44563397 Lac9g2066 Lac-Chr9:40297547 1.30E-48 dispersed
Lac1g2924 Lac-Chr1:50047686 Lac9g2066 Lac-Chr9:40297547 4.30E-31 dispersed
Lac7g1748 Lac-Chr7:22426023 Lac9g2066 Lac-Chr9:40297547 9.80E-57 dispersed
Lac9g2066 Lac-Chr9:40297547 Lac9g2067 Lac-Chr9:40301419 1.40E-100 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2066 K08486 - csv:101214355 441.039