Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2079 ATGGATTACTCTGCCGGCAACTGGAATTGGCTCTTCGATTACTCTACAATGGATGATCTCGCCGTCGCCGCCGGCCACTTCTCGCCGCCGCAGTCCATCAGTTTCAGCTGGTCCAATCCCTCCATCAACTTTTCATCTAAAGACAGCCTGGAGGTAGACTGCTCATATGGAGATCCGGACAGCTTACAGGAAGTGGGTCGGAAACGGCCAAGGGCTGAAACAAGTGCTGCATCTTCCTCTAAAGCATGCAGAGAGAAATTGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTGCTGTCCTGGAACCTGGAAAACCACCCAAAACAGACAAGGTTGCAATCTTGAGTGATGCTATCAGAATGTTAACTGATTTACAATGTGAAACCCAGAAGCTGAAAGAATCGAAAGAGGATCTGAAGGCAAAAATCAAAGAATTAAAGGTTGAAAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAAGTTGGAGCTGCATATCAAAGCAGTTAATACTCGAGCATCTGACATCCAGCATCCTCCCCCTACATTGTCAGCTGCATTCACAGCACAAGGGCAAGCTGCTGGTAACAAGCTAATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCACCTGCAGCAGTTGACATATCTCAGGATCATGTGCTCCGCCCACCAGTTGCTTAA 717 47.0 MDYSAGNWNWLFDYSTMDDLAVAAGHFSPPQSISFSWSNPSINFSSKDSLEVDCSYGDPDSLQEVGRKRPRAETSAASSSKACREKLRRDKLNERFLELAAVLEPGKPPKTDKVAILSDAIRMLTDLQCETQKLKESKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELHIKAVNTRASDIQHPPPTLSAAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40394046 40396955 - Lag0009566.1 Lac9g2079 621005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2079 238 MobiDBLite consensus disorder prediction 61 82 - -
Lac9g2079 238 Gene3D arf6 gtpase in complex with a specific effector, jip4 126 180 - -
Lac9g2079 238 SMART finulus 82 133 IPR011598 GO:0046983(InterPro)
Lac9g2079 238 Coils Coil 124 179 - -
Lac9g2079 238 PANTHER BHLH TRANSCRIPTION FACTOR 9 238 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Lac9g2079 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 152 IPR036638 GO:0046983(InterPro)
Lac9g2079 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983(InterPro)
Lac9g2079 238 FunFam Transcription factor bHLH34 67 125 - -
Lac9g2079 238 Pfam Helix-loop-helix DNA-binding domain 80 128 IPR011598 GO:0046983(InterPro)
Lac9g2079 238 CDD bHLH_AtILR3_like 81 156 - -
Lac9g2079 238 Gene3D - 67 125 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1493 Lac-Chr5:29885775 Lac9g2079 Lac-Chr9:40394046 8.40E-59 dispersed
Lac7g0603 Lac-Chr7:4819218 Lac9g2079 Lac-Chr9:40394046 5.10E-26 dispersed
Lac9g1781 Lac-Chr9:37540132 Lac9g2079 Lac-Chr9:40394046 9.90E-09 dispersed
Lac2g1358 Lac-Chr2:11426874 Lac9g2079 Lac-Chr9:40394046 9.90E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24458 PF00010 HLH 2.00E-09 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2079 - - - 0.0