Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2084 | ATGCCTAAATTAGAAAAATTGCAAACTAGACGGCCTGGATCTTTATCCGTGGCCGAGACTCTAGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGAAGAGGCCAAACTCACCCGTAAAGTTCCAGCCAAGGGATCAAAGAAGGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATTTGCGATGTAATTACAGAGGAGTGAGGCAAAGGACATGGGGGAAATGGGTTGCAGAAATTCGGGCACCGAATAGGGGAAGTCGGCTCTGGTTGGGTACATTTCCATCTGCCATTGATGCTGCTCTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGCAGTTTAGCTCGCCTCAATTTTCCCAACATCTCAATTCCAACCTTGCTAAAAGAAAAAGAACCATCAACAAAGGATTCCCCTGAAGTCAAGAGGTCATCAATCTCTTCTTTAGGGTCAACTTCACTTAGTCTGAGTTCTGAGTCCACAATAACATCATCAGATCACTCTGAGGATTGTGCAGGTGAAGATGTCTAG | 540 | 44.81 | MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLARLNFPNISIPTLLKEKEPSTKDSPEVKRSSISSLGSTSLSLSSESTITSSDHSEDCAGEDV | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 40447814 | 40448353 | + | Lag0009571.1 | Lac9g2084 | 621010 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2084 | 179 | CDD | AP2 | 65 | 124 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2084 | 179 | PRINTS | Ethylene responsive element binding protein signature | 89 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2084 | 179 | PRINTS | Ethylene responsive element binding protein signature | 67 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2084 | 179 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 6 | 164 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Lac9g2084 | 179 | MobiDBLite | consensus disorder prediction | 143 | 170 | - | - | |
Lac9g2084 | 179 | Gene3D | AP2/ERF domain | 66 | 125 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2084 | 179 | ProSiteProfiles | AP2/ERF domain profile. | 66 | 123 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2084 | 179 | Pfam | AP2 domain | 66 | 115 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2084 | 179 | SMART | rav1_2 | 66 | 129 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g2084 | 179 | MobiDBLite | consensus disorder prediction | 133 | 179 | - | - | |
Lac9g2084 | 179 | SUPERFAMILY | DNA-binding domain | 66 | 123 | IPR016177 | GO:0003677(InterPro) | |
Lac9g2084 | 179 | FunFam | Ethylene-responsive transcription factor 2 | 65 | 124 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g1826 | Lac-Chr1:39954683 | Lac9g2084 | Lac-Chr9:40447814 | 1.70E-37 | dispersed | |
Lac8g2876 | Lac-Chr8:45899438 | Lac9g2084 | Lac-Chr9:40447814 | 2.10E-17 | dispersed | |
Lac9g2084 | Lac-Chr9:40447814 | Lac9g2150 | Lac-Chr9:41019618 | 5.50E-18 | dispersed | |
Lac9g2084 | Lac-Chr9:40447814 | Lac8g2871 | Lac-Chr8:45837693 | 1.70E-48 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24459 | PF00847 | AP2 | 7.90E-14 | CL0081 | Lac | TF |
Pathway information
