Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2084 ATGCCTAAATTAGAAAAATTGCAAACTAGACGGCCTGGATCTTTATCCGTGGCCGAGACTCTAGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGAAGAGGCCAAACTCACCCGTAAAGTTCCAGCCAAGGGATCAAAGAAGGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATTTGCGATGTAATTACAGAGGAGTGAGGCAAAGGACATGGGGGAAATGGGTTGCAGAAATTCGGGCACCGAATAGGGGAAGTCGGCTCTGGTTGGGTACATTTCCATCTGCCATTGATGCTGCTCTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGCAGTTTAGCTCGCCTCAATTTTCCCAACATCTCAATTCCAACCTTGCTAAAAGAAAAAGAACCATCAACAAAGGATTCCCCTGAAGTCAAGAGGTCATCAATCTCTTCTTTAGGGTCAACTTCACTTAGTCTGAGTTCTGAGTCCACAATAACATCATCAGATCACTCTGAGGATTGTGCAGGTGAAGATGTCTAG 540 44.81 MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLARLNFPNISIPTLLKEKEPSTKDSPEVKRSSISSLGSTSLSLSSESTITSSDHSEDCAGEDV 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40447814 40448353 + Lag0009571.1 Lac9g2084 621010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2084 179 CDD AP2 65 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2084 179 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2084 179 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2084 179 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 164 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Lac9g2084 179 MobiDBLite consensus disorder prediction 143 170 - -
Lac9g2084 179 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2084 179 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2084 179 Pfam AP2 domain 66 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2084 179 SMART rav1_2 66 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2084 179 MobiDBLite consensus disorder prediction 133 179 - -
Lac9g2084 179 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677(InterPro)
Lac9g2084 179 FunFam Ethylene-responsive transcription factor 2 65 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1826 Lac-Chr1:39954683 Lac9g2084 Lac-Chr9:40447814 1.70E-37 dispersed
Lac8g2876 Lac-Chr8:45899438 Lac9g2084 Lac-Chr9:40447814 2.10E-17 dispersed
Lac9g2084 Lac-Chr9:40447814 Lac9g2150 Lac-Chr9:41019618 5.50E-18 dispersed
Lac9g2084 Lac-Chr9:40447814 Lac8g2871 Lac-Chr8:45837693 1.70E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24459 PF00847 AP2 7.90E-14 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2084 - - - 0.0