Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2106 ATGATATCAGAGTGCTCTTCTCTAGCTCGAATGGGAAATGGCCGTAGTGAGGTGTTCAAGTTGTGCATATGCGTTTCGATATTATTAGCATCCGCCAGAGGCAGCGTCGTCCACAAATTAAGAGACAGTGATGGACATTCAATTGTTTCGGAGGGATCGGGCAAATTCGAACTTGGTTTTTTCACTCCTCAGGGAAGCTTATCAGACGCTAGAAGATACGTCGGAATATGGTACCGCGGCTCTAAACCGGAGGTGGTTGTATGGGTTGCCAATAGAAACCACCCACTACCCGACAATAATGGAACCCTTTCCATCAAAGATGGCAACCTCCTGGTATTGGCATCAAACGGCACTTCCTTATGGTCCACCGAACTCCAACTCAATTCTACTAATTCTAAGAACACAACTATGGTGTTCATGGCTTCTGGGAACTTGGTTCTCAAGGGATCAGCCCTCAATGGCACAACTGATCTGTGGCAAAGCTTCCAAAATCCAACCGATACATTTCTTCCGGGCATGAACATGAGCGACGGCTTGAAGTTGACTTCTTGGAAAAGTGCAAAAGACCCATCGCCAGGGAATTTCACGTTTCTCAAGGATACGGAGGGCCGCTACATCATCGAGAGACTCAGTGCACAGTATTGGGTCAGCAAGGAACTATGGCAAAATTTCTCCATAAAACCCGATGAAACCATTGATACAGTGATATACTACTTGTCAAAAATTAGTGATGGTGAATTGGAGGCCAGGAACTACACCGTTCCATTTCAAAATCAAGACCTGGATTACAACTATACAAGGGCAGTTATCAGTTTCAGCGGGCACATACAGTACCTTGCGAGGAACAGAGTGAGTGGAAAGTGGGCTGTCATCTGGTCGGAACCGAAAAGCAGATGTAGTATGGTAAAAGCTTGCGGGAACTACGGTATCTGTCGGAGTGACACTAGACACACTTGCAGGTGCTTGCCTGGGTCTGAGCCCAAGTCCAAAAATGAATGGTATTCTGGTGATTACTCACATGGGTGCCAGACAAAATCAGAAATTTGCCCCAAAGAACACCTTCAAGCTCGAGAGTTCTTGACAATCAATATGAAAGTGAGAAAGACGTCTAATAACGTCAAAGTCAAAGATTTTGGGGAATGCAAAAACAAGTGCCTGGAATCCTGTCTATGTAAGGCGTATTCAGAAGAAGCAACCAGTAGATCCGATATTGTTTGCTCCATTTGGGAGGATGATCTCGAAGACATTTGGGAATATGCAGATGGTGGTGGTGACGTTAACATCAGTATCGAACGTTCTGACATTGAATTAACAAAGCTTGATTGTACACCATGTGGAAGCAACGTCATCCCTTATCCTCTCAGCACAGAATCCAACTGCGGTGATCCTATGTATCATAACTTCACTTGTTTCGATTTTTCCGGCCAGGTCTTCTTTATGGTAGCAGATTTTGGCTACAGAATCACGAACATCGACCCACAACTAAATACTTTTACCATTTCAACAGACGATTCTATCTGCAGAGGTAATGATACAGATGCAATTCAAAAACTACTGAAATTGGAACACTCGTCTACATTCAAAGTAAGCAGCGGCTGTGACTCTGAATTTAATGAAATTGATATTCAATGGAGGAAACCATTAGAGCCAATCTGCAATTCACCAAAAGATTGCACCAATTGGCCGAATTCATCATGCAACTCATCAACGGATGGAACAAAGAGGTGTTTGTGCAATCCTTCTTTTAACTGGACTGGTACTGGCTGCCGTATTCCTCAAGAGGATGGTTTGAATCGGCCACCTCCGAAACAGAGAAATGGCAGAGTTGATATCATTGTCCCAGTGGTCATTGCCGGATTGATTGTTATTTCCTCCTTGGTGTTGTATATTTACTACAAAAGAAGGAAGCTACAAAATCAAAAAGTTGTAGTGCAAAGAACAAGTTTTTGGGGAAAATGGGAAACTGCTCACTTGTACGAAAGTGAGAAACGTGTCAAAGACTTTATCGGTTCAGGAATGTTTGGAGAAGATGATAGAAAAGCCATAGAAGTACCCGTTTTTGATTTAGAAACCATACTCAGTGCTACAGACAACTTCTCTGAAGCAAACAGAATTGGACGAGGAGGATTTGGGACAGTTTACAAGGGACTTTTTCCAGGAGGACTGGAAATTGCGATAAAGAGGCTGTCCCAATGTTCCGCCCAAGGCGTAGATGAGTTTAAGAATGAAGCCATTTTGATCGCAAAACTTCAGCATCGAAATCTCGTTAGACTCTTGGGCTATTGTGTTGAGGGAGAAGAAAAAATATTGGTCTATGAGTATATGCCCAACAAAAGCTTAGACTTTTTTATATTTGATCGAACGCTATGTTTACTGGTGAATTGGGACATGCGGTTTAATATCATAGTGGGCATTGTTCGAGGGCTAGTTTATCTCCATGAAGATTCAAGGTTAAGGATTATTCATAGAGATATGAAAACAAGCAATGTTCTATTGGACACAAATATGAATCCTAAAATTTCCGACTTTGGTTTAGCAAGAATTTTTGATGGCACACAATCAGAGGCAACCACGAAGAGAATTGTTGGAACCTACGGTTACATGTCACCAGAATATGCAATGGATGGATCGTTCTCAGTCAAATCGGACGTGTTCAGTTTTGGTATAGTTGTGCTGGAGATTGTTAGTGGAAGAAGGAACACTGGCTTCTACCAATCAAAAGAGGCCTTGAACCTTCTTGGATACGTATGGAAGTTGTGGAGAGAAAAAAGAGCATTGGAAATAGCAGAGGCGGGCGTACGAGAAAGCTGCAATCCAAGTGAAGTTGTAAAATGTGTAGCTGTGGGGTTGCTGTGTGTACAAGAAGATCCCAACGATCGTCCAACCATGTCCAATGTAGCTTTTATGCTAAGCTCTGGTAGTGATCCTTCTTCTCTTCCAAATCCTAAACAGCCAGCTTTCGTTGATAAAAAATCAGCTCCTTCTGCTTCTTCTGCAACTTCCTCTTCGGGCTTTAAGCAAGAATTAGTGAGCAATGATTGTACCTTACTTGAGCCTCGTTAA 3063 42.67 MISECSSLARMGNGRSEVFKLCICVSILLASARGSVVHKLRDSDGHSIVSEGSGKFELGFFTPQGSLSDARRYVGIWYRGSKPEVVVWVANRNHPLPDNNGTLSIKDGNLLVLASNGTSLWSTELQLNSTNSKNTTMVFMASGNLVLKGSALNGTTDLWQSFQNPTDTFLPGMNMSDGLKLTSWKSAKDPSPGNFTFLKDTEGRYIIERLSAQYWVSKELWQNFSIKPDETIDTVIYYLSKISDGELEARNYTVPFQNQDLDYNYTRAVISFSGHIQYLARNRVSGKWAVIWSEPKSRCSMVKACGNYGICRSDTRHTCRCLPGSEPKSKNEWYSGDYSHGCQTKSEICPKEHLQAREFLTINMKVRKTSNNVKVKDFGECKNKCLESCLCKAYSEEATSRSDIVCSIWEDDLEDIWEYADGGGDVNISIERSDIELTKLDCTPCGSNVIPYPLSTESNCGDPMYHNFTCFDFSGQVFFMVADFGYRITNIDPQLNTFTISTDDSICRGNDTDAIQKLLKLEHSSTFKVSSGCDSEFNEIDIQWRKPLEPICNSPKDCTNWPNSSCNSSTDGTKRCLCNPSFNWTGTGCRIPQEDGLNRPPPKQRNGRVDIIVPVVIAGLIVISSLVLYIYYKRRKLQNQKVVVQRTSFWGKWETAHLYESEKRVKDFIGSGMFGEDDRKAIEVPVFDLETILSATDNFSEANRIGRGGFGTVYKGLFPGGLEIAIKRLSQCSAQGVDEFKNEAILIAKLQHRNLVRLLGYCVEGEEKILVYEYMPNKSLDFFIFDRTLCLLVNWDMRFNIIVGIVRGLVYLHEDSRLRIIHRDMKTSNVLLDTNMNPKISDFGLARIFDGTQSEATTKRIVGTYGYMSPEYAMDGSFSVKSDVFSFGIVVLEIVSGRRNTGFYQSKEALNLLGYVWKLWREKRALEIAEAGVRESCNPSEVVKCVAVGLLCVQEDPNDRPTMSNVAFMLSSGSDPSSLPNPKQPAFVDKKSAPSASSATSSSGFKQELVSNDCTLLEPR 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40719050 40722769 - Lag0009593.1 Lac9g2106 621032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2106 1020 CDD STKc_IRAK 705 970 - -
Lac9g2106 1020 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 35 985 - -
Lac9g2106 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2106 1020 Pfam D-mannose binding lectin 86 177 IPR001480 -
Lac9g2106 1020 ProSitePatterns Protein kinases ATP-binding region signature. 705 727 IPR017441 GO:0005524(InterPro)
Lac9g2106 1020 MobiDBLite consensus disorder prediction 991 1006 - -
Lac9g2106 1020 SMART serkin_6 699 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2106 1020 ProSiteProfiles PAN/Apple domain profile. 349 433 IPR003609 -
Lac9g2106 1020 SUPERFAMILY Protein kinase-like (PK-like) 683 970 IPR011009 -
Lac9g2106 1020 SUPERFAMILY alpha-D-mannose-specific plant lectins 86 189 IPR036426 -
Lac9g2106 1020 SMART blect_4 39 165 IPR001480 -
Lac9g2106 1020 ProSiteProfiles Protein kinase domain profile. 699 987 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2106 1020 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 664 774 - -
Lac9g2106 1020 Pfam S-locus glycoprotein domain 233 328 IPR000858 GO:0048544(InterPro)
Lac9g2106 1020 Pfam PAN-like domain 363 416 IPR003609 -
Lac9g2106 1020 CDD B_lectin 43 165 IPR001480 -
Lac9g2106 1020 CDD PAN_AP_plant 358 428 - -
Lac9g2106 1020 Pfam Protein tyrosine and serine/threonine kinase 703 967 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2106 1020 Gene3D Phosphorylase Kinase; domain 1 672 774 - -
Lac9g2106 1020 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 775 977 - -
Lac9g2106 1020 ProSiteProfiles Bulb-type lectin domain profile. 33 160 IPR001480 -
Lac9g2106 1020 Gene3D Transferase(Phosphotransferase) domain 1 775 980 - -
Lac9g2106 1020 MobiDBLite consensus disorder prediction 973 1006 - -
Lac9g2106 1020 Gene3D - 38 163 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0656 Lac-Chr12:6838027 Lac9g2106 Lac-Chr9:40719050 7.10E-259 dispersed
Lac9g2105 Lac-Chr9:40710714 Lac9g2106 Lac-Chr9:40719050 0.00E+00 tandem
Lac12g0661 Lac-Chr12:6875543 Lac9g2106 Lac-Chr9:40719050 1.20E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86443 PF07714 PK_Tyr_Ser-Thr 1.00E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2106 - - - 0.0