Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2123 | ATGAGATGGAATTCCTTCTACACCAGAGCCTCCAAGGCTTTTCATGACCATCCTTCCATCTCCAAGCTTCTCATCATTTTCACTGTCAGTGGAGGTGGACTGGTGGCAGCTACTAATGGAAAATCTCTGTATCATTCTGCATATACTGATGCAGTCCGACGAGATGGTGACTGCAAGAAGAAGAAGGTGGTGGTGCTTGGAACAGGATGGGCTGGCACCAGCTTTTTGAAGAACCTTAAGAGCTCCTCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTTCCTAGTGTCACTTGTGGCAATGTCGAGGCGCGCAGCATTGTCGAACCAATTCGTACGATTGCAAAGAAGAAAGGTTTGGATATTGAATTTAGGGAAGCTGAGTGCTATAAGATAGATGCAGAGAAGAAGACGGTGTTCTGTCGATCAAGTCAAGACACCAATCTGGGTGGCAGAGAAGAATTTTCTGTAGACTATGACTATCTGATAATAGCCATGGGAGCTAAATCCAACACTTTCAATACACCTGGAGTTGAGGAACATGCACACTTCTTGAAGGGAGTGGAAGATGCTCAGAGGATTCGTCAGACCGTAATCGATTGTTTCGAGCGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGAGGTCCAACTGGGGTGGAATTTGCAGCAGAGCTTCATGATTTTGCAGTTGAGGATTTAGCATTATTGTATCCTTCTTTGAAAGACTATGTGAAGATTACCCTCCTAGAGGCAGGGGATCATATTTTGAACATGTTTGACAAGAGGATTGCTGCCTTTGCTGAAGACAAATTTCGAAGAGAGGGGATTAATTTAAAAACTGGTTCCATGGTTGTAAAAGTTACTGATAAGGAGATCTCCACCAAAGAAAGTGCCACTGGTGAATTTGTGTCTGTTCCTTATGGAATGGTCATCTGGTCCACCGGCATCGGCCCTCGGCCTCAAATTGTCGATTTCATGAAGCAGATCGGTCAGACTAACAGAAGAGCTTTGGCGACTGATGAATGGCTAAGGGTTGAAGGATGTGATGATGTCTATGCTCTTGGTGATTGTGCAACCATAAATCAAAGAAGAGTCATGGAAGATATTGCAGCAATATTCTGTAAGGCAGACAAGGACAAGTCAGGAACTTTAACCCTGCAAGAGTTTCAAGAAGTGGTAGAGGATATCCGTGAGAGGTACCCTCAAGTAGAGATCTATCTGAAGAAGAAGCAGATGAAGAACTTTGCAGCTTTGTTGAAGAAGACACAATCAGACGAACAGAAACAGTCGACCGAGCTCGATATTGAAAGCTTTAAGTCCTTACTTTCTGAAGTTGATTCTCAGATGAAAAATCTGCCTGCTACTGCTCAAGTTGCTGCACAACAAGGTGAATATCTTGCAAGCTGCTTCAACAGGATGGAACTATGTGAAAAGTACCCTGAAGGTCCTCTCCGATTTAGAGGGACGGGACGACATCGGTTTCATCCCTTCAGGTATAAGCATTTTGGGCAGTTTGCTCCACTGGGGGGAGAACAAGCTGCAGCTCAACTACCAGGAGATTGGATCTCAATTGGTCATAGCACCCAGTGGCTTTGGTACTCAGTGTATGCAAGCAAACTAGTAAGCTGGCGCACAAGGATTCTGGTCATGTCAGATTGGGGTAGAAGATTCATTTTTGGCAGGGATTCAAGCAGAATCTGA | 1758 | 44.14 | MRWNSFYTRASKAFHDHPSISKLLIIFTVSGGGLVAATNGKSLYHSAYTDAVRRDGDCKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGNVEARSIVEPIRTIAKKKGLDIEFREAECYKIDAEKKTVFCRSSQDTNLGGREEFSVDYDYLIIAMGAKSNTFNTPGVEEHAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLALLYPSLKDYVKITLLEAGDHILNMFDKRIAAFAEDKFRREGINLKTGSMVVKVTDKEISTKESATGEFVSVPYGMVIWSTGIGPRPQIVDFMKQIGQTNRRALATDEWLRVEGCDDVYALGDCATINQRRVMEDIAAIFCKADKDKSGTLTLQEFQEVVEDIRERYPQVEIYLKKKQMKNFAALLKKTQSDEQKQSTELDIESFKSLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMELCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQAAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRILVMSDWGRRFIFGRDSSRI | 585 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 40850736 | 40853555 | - | Lag0009610.1 | Lac9g2123 | 621049 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2123 | 585 | Pfam | NDH2 C-terminal domain | 520 | 581 | IPR054585 | - | |
Lac9g2123 | 585 | Gene3D | - | 52 | 439 | - | - | |
Lac9g2123 | 585 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 166 | 184 | - | - | |
Lac9g2123 | 585 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 227 | 245 | - | - | |
Lac9g2123 | 585 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 63 | 82 | - | - | |
Lac9g2123 | 585 | SMART | efh_1 | 387 | 415 | IPR002048 | GO:0005509(InterPro) | |
Lac9g2123 | 585 | SUPERFAMILY | FAD/NAD(P)-binding domain | 60 | 279 | IPR036188 | - | |
Lac9g2123 | 585 | FunFam | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial | 429 | 584 | - | - | |
Lac9g2123 | 585 | ProSitePatterns | EF-hand calcium-binding domain. | 396 | 408 | IPR018247 | - | |
Lac9g2123 | 585 | Pfam | Pyridine nucleotide-disulphide oxidoreductase | 61 | 385 | IPR023753 | GO:0016491(InterPro) | |
Lac9g2123 | 585 | SUPERFAMILY | EF-hand | 341 | 463 | IPR011992 | - | |
Lac9g2123 | 585 | SUPERFAMILY | FAD/NAD(P)-binding domain | 221 | 380 | IPR036188 | - | |
Lac9g2123 | 585 | PANTHER | NADH DEHYDROGENASE | 47 | 585 | IPR045024 | GO:0003954(InterPro)|GO:0006116(InterPro) | |
Lac9g2123 | 585 | Gene3D | - | 461 | 575 | - | - | |
Lac9g2123 | 585 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 383 | 418 | IPR002048 | GO:0005509(InterPro) | |
Lac9g2123 | 585 | FunFam | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial | 52 | 412 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0805 | Lac-Chr10:6387785 | Lac9g2123 | Lac-Chr9:40850736 | 7.00E-256 | dispersed | |
Lac1g3300 | Lac-Chr1:52775179 | Lac9g2123 | Lac-Chr9:40850736 | 1.50E-71 | dispersed | |
Lac9g2123 | Lac-Chr9:40850736 | Lac9g2384 | Lac-Chr9:43006185 | 4.30E-72 | dispersed | |
Lac13g0591 | Lac-Chr13:4379960 | Lac9g2123 | Lac-Chr9:40850736 | 2.60E-06 | transposed | |
Lac12g0676 | Lac-Chr12:7078655 | Lac9g2123 | Lac-Chr9:40850736 | 3.50E-223 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g2123 | K03885 | - | csv:101209855 | 1097.8 |