Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2123 ATGAGATGGAATTCCTTCTACACCAGAGCCTCCAAGGCTTTTCATGACCATCCTTCCATCTCCAAGCTTCTCATCATTTTCACTGTCAGTGGAGGTGGACTGGTGGCAGCTACTAATGGAAAATCTCTGTATCATTCTGCATATACTGATGCAGTCCGACGAGATGGTGACTGCAAGAAGAAGAAGGTGGTGGTGCTTGGAACAGGATGGGCTGGCACCAGCTTTTTGAAGAACCTTAAGAGCTCCTCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTTCCTAGTGTCACTTGTGGCAATGTCGAGGCGCGCAGCATTGTCGAACCAATTCGTACGATTGCAAAGAAGAAAGGTTTGGATATTGAATTTAGGGAAGCTGAGTGCTATAAGATAGATGCAGAGAAGAAGACGGTGTTCTGTCGATCAAGTCAAGACACCAATCTGGGTGGCAGAGAAGAATTTTCTGTAGACTATGACTATCTGATAATAGCCATGGGAGCTAAATCCAACACTTTCAATACACCTGGAGTTGAGGAACATGCACACTTCTTGAAGGGAGTGGAAGATGCTCAGAGGATTCGTCAGACCGTAATCGATTGTTTCGAGCGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGAGGTCCAACTGGGGTGGAATTTGCAGCAGAGCTTCATGATTTTGCAGTTGAGGATTTAGCATTATTGTATCCTTCTTTGAAAGACTATGTGAAGATTACCCTCCTAGAGGCAGGGGATCATATTTTGAACATGTTTGACAAGAGGATTGCTGCCTTTGCTGAAGACAAATTTCGAAGAGAGGGGATTAATTTAAAAACTGGTTCCATGGTTGTAAAAGTTACTGATAAGGAGATCTCCACCAAAGAAAGTGCCACTGGTGAATTTGTGTCTGTTCCTTATGGAATGGTCATCTGGTCCACCGGCATCGGCCCTCGGCCTCAAATTGTCGATTTCATGAAGCAGATCGGTCAGACTAACAGAAGAGCTTTGGCGACTGATGAATGGCTAAGGGTTGAAGGATGTGATGATGTCTATGCTCTTGGTGATTGTGCAACCATAAATCAAAGAAGAGTCATGGAAGATATTGCAGCAATATTCTGTAAGGCAGACAAGGACAAGTCAGGAACTTTAACCCTGCAAGAGTTTCAAGAAGTGGTAGAGGATATCCGTGAGAGGTACCCTCAAGTAGAGATCTATCTGAAGAAGAAGCAGATGAAGAACTTTGCAGCTTTGTTGAAGAAGACACAATCAGACGAACAGAAACAGTCGACCGAGCTCGATATTGAAAGCTTTAAGTCCTTACTTTCTGAAGTTGATTCTCAGATGAAAAATCTGCCTGCTACTGCTCAAGTTGCTGCACAACAAGGTGAATATCTTGCAAGCTGCTTCAACAGGATGGAACTATGTGAAAAGTACCCTGAAGGTCCTCTCCGATTTAGAGGGACGGGACGACATCGGTTTCATCCCTTCAGGTATAAGCATTTTGGGCAGTTTGCTCCACTGGGGGGAGAACAAGCTGCAGCTCAACTACCAGGAGATTGGATCTCAATTGGTCATAGCACCCAGTGGCTTTGGTACTCAGTGTATGCAAGCAAACTAGTAAGCTGGCGCACAAGGATTCTGGTCATGTCAGATTGGGGTAGAAGATTCATTTTTGGCAGGGATTCAAGCAGAATCTGA 1758 44.14 MRWNSFYTRASKAFHDHPSISKLLIIFTVSGGGLVAATNGKSLYHSAYTDAVRRDGDCKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGNVEARSIVEPIRTIAKKKGLDIEFREAECYKIDAEKKTVFCRSSQDTNLGGREEFSVDYDYLIIAMGAKSNTFNTPGVEEHAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLALLYPSLKDYVKITLLEAGDHILNMFDKRIAAFAEDKFRREGINLKTGSMVVKVTDKEISTKESATGEFVSVPYGMVIWSTGIGPRPQIVDFMKQIGQTNRRALATDEWLRVEGCDDVYALGDCATINQRRVMEDIAAIFCKADKDKSGTLTLQEFQEVVEDIRERYPQVEIYLKKKQMKNFAALLKKTQSDEQKQSTELDIESFKSLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMELCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQAAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRILVMSDWGRRFIFGRDSSRI 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40850736 40853555 - Lag0009610.1 Lac9g2123 621049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2123 585 Pfam NDH2 C-terminal domain 520 581 IPR054585 -
Lac9g2123 585 Gene3D - 52 439 - -
Lac9g2123 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Lac9g2123 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 227 245 - -
Lac9g2123 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Lac9g2123 585 SMART efh_1 387 415 IPR002048 GO:0005509(InterPro)
Lac9g2123 585 SUPERFAMILY FAD/NAD(P)-binding domain 60 279 IPR036188 -
Lac9g2123 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 429 584 - -
Lac9g2123 585 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Lac9g2123 585 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 385 IPR023753 GO:0016491(InterPro)
Lac9g2123 585 SUPERFAMILY EF-hand 341 463 IPR011992 -
Lac9g2123 585 SUPERFAMILY FAD/NAD(P)-binding domain 221 380 IPR036188 -
Lac9g2123 585 PANTHER NADH DEHYDROGENASE 47 585 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Lac9g2123 585 Gene3D - 461 575 - -
Lac9g2123 585 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509(InterPro)
Lac9g2123 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 52 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0805 Lac-Chr10:6387785 Lac9g2123 Lac-Chr9:40850736 7.00E-256 dispersed
Lac1g3300 Lac-Chr1:52775179 Lac9g2123 Lac-Chr9:40850736 1.50E-71 dispersed
Lac9g2123 Lac-Chr9:40850736 Lac9g2384 Lac-Chr9:43006185 4.30E-72 dispersed
Lac13g0591 Lac-Chr13:4379960 Lac9g2123 Lac-Chr9:40850736 2.60E-06 transposed
Lac12g0676 Lac-Chr12:7078655 Lac9g2123 Lac-Chr9:40850736 3.50E-223 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2123 K03885 - csv:101209855 1097.8