Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2142 ATGGGGAGCTGTGTGTCTACGGGCATTCAGATTAATTGCAATGGTAGAAGCAATGGAGAGAGAGTTTCTATATCCTGTTTGGGAAATGGAGGTTGTGGCCAGATTGAAAGAAAGAGAACATTCTCAGATCATTTGTTTTCTCTCCAGCATTTGAATTCAATACCTAATAGACTTGTCTCCAATGGAAAGACTCGAAATTCTTGCATTTTCACTCAGCAGGGTCGAAAGGGTATAAACCAGGATGCCATGGTTGTATGGGAAGACTTCATATCAGAAGGTGCAATTTTCTGTGGGATATTTGATGGTCATGGTCCACATGGTCATGTCGTTGCACGAAAGGTTAGAGATGTTCTGCCAAGAAAGCTGGTGTCATTCTGGCAGTCATCTCAGTTGAAGCATAAGAGATCAAATAGAACTTCTTGTCTTCGGTGGAAACGGAAGAATTTAACAGATGGTGAAGGACAGGACACGGATGGTTCACTGGAGGATAAATCAAGTTCTTTATGGAGAAGAGCTTTCCTCAAATCATATAAAGCCATGGATAAGGAGCTCAAATCTCATCCCAAAGTGGACTGTTTCTGTAGTGGCAGTACGGCGGTAACTCTAGTGAAGCAGGGTTCAGATCTATTCGTAGGAAGTATTGGGGATTCTCGAGCAATTCTTGGATCTAAAGACAGCAGTGGTTCCCTTGTAGCAACCCAGTTGACAGTAGATCTAAAGCCCGATTTGCCTAGAGAAGCTGAAAGGATAAAGAAGTGTAAAGGAAGGGTATTTGCATTACAAGATGAGCCAGAAGTGCCAAGAGTGTGGCTTCCATTTGACAACGCCCCCGGATTAGCCATGGCTCGAGCATTTGGTGACTTCTGCTTGAAGGACTATGGAGTTATCTCCATTCCCGAGTTCTCACACCACGTGCTTACAGATAATGATCTTTTCGTTGTCCTTGCTTCAGATGGGGTTTGGGACGTATTGAGCAATGAACAGGTGGTTGAGATAGTGTATTCTGCCTCAACTCGATCATCGGCAGCTCGAATGCTGGTAGACTCAGCTGGTCGTGAGTGGAAGCTCAAGTACCCTAATTCAAAAATGGATGACTGTGCAGTCGTATGCCTTTTCTTAGACGGGAAAATGGATTCAGAATCAGAAAATGAAGAACAAACTTGTTCTGAAACTCCTCAAGCCAATCAAATGGGTAACACTACAGATTCAGACGAAGAGCAGAAGACAGAACCAAGTTTGCAAAGGAATTACACGGTCCGATCGTCGGAAGAAAAGGACCAAATTGGAGGATTATCTCCACATGGTGAAGAGAATGGACAATCAACGTCTGCTGAAGATGAGAATTGGTTGGGATTGGAGGGTGTAACAAGAGTAAACTCTCTGGTTCATCTACCTAGATTTTCTTGA 1407 43.57 MGSCVSTGIQINCNGRSNGERVSISCLGNGGCGQIERKRTFSDHLFSLQHLNSIPNRLVSNGKTRNSCIFTQQGRKGINQDAMVVWEDFISEGAIFCGIFDGHGPHGHVVARKVRDVLPRKLVSFWQSSQLKHKRSNRTSCLRWKRKNLTDGEGQDTDGSLEDKSSSLWRRAFLKSYKAMDKELKSHPKVDCFCSGSTAVTLVKQGSDLFVGSIGDSRAILGSKDSSGSLVATQLTVDLKPDLPREAERIKKCKGRVFALQDEPEVPRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHHVLTDNDLFVVLASDGVWDVLSNEQVVEIVYSASTRSSAARMLVDSAGREWKLKYPNSKMDDCAVVCLFLDGKMDSESENEEQTCSETPQANQMGNTTDSDEEQKTEPSLQRNYTVRSSEEKDQIGGLSPHGEENGQSTSAEDENWLGLEGVTRVNSLVHLPRFS 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40949550 40951466 - Lag0009629.1 Lac9g2142 621068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2142 468 ProSiteProfiles PPM-type phosphatase domain profile. 66 373 IPR001932 -
Lac9g2142 468 MobiDBLite consensus disorder prediction 381 450 - -
Lac9g2142 468 CDD PP2Cc 72 373 IPR001932 -
Lac9g2142 468 SMART PP2C_4 55 371 IPR001932 -
Lac9g2142 468 PANTHER PROTEIN PHOSPHATASE 67 372 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac9g2142 468 FunFam probable protein phosphatase 2C 52 57 376 - -
Lac9g2142 468 Gene3D - 55 375 IPR036457 -
Lac9g2142 468 Pfam Protein phosphatase 2C 168 350 IPR001932 -
Lac9g2142 468 MobiDBLite consensus disorder prediction 386 402 - -
Lac9g2142 468 SUPERFAMILY PP2C-like 56 375 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2352 Lac-Chr12:40678509 Lac9g2142 Lac-Chr9:40949550 8.50E-23 dispersed
Lac5g0625 Lac-Chr5:7426645 Lac9g2142 Lac-Chr9:40949550 3.90E-120 dispersed
Lac6g1670 Lac-Chr6:24678812 Lac9g2142 Lac-Chr9:40949550 4.80E-114 dispersed
Lac6g2567 Lac-Chr6:43380901 Lac9g2142 Lac-Chr9:40949550 6.10E-79 dispersed
Lac7g0812 Lac-Chr7:6494413 Lac9g2142 Lac-Chr9:40949550 1.80E-22 dispersed
Lac9g1843 Lac-Chr9:38204733 Lac9g2142 Lac-Chr9:40949550 1.90E-10 dispersed
Lac9g2134 Lac-Chr9:40897116 Lac9g2142 Lac-Chr9:40949550 7.30E-49 proximal
Lac12g0692 Lac-Chr12:7201165 Lac9g2142 Lac-Chr9:40949550 2.60E-184 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2142 - - - 0.0