Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2168 ATGGGCTGTATCTGTTCGAAGGTTTTCGCGGATGAGTGTAGTGACCATGAACATGATAGCTCCAAAAGAGCTTATTCCTCCAGAAATCAGCTCTCTGAATTGAAAATTTCGAGAGCTGGCTGTTCCAAATCGGAGAAGATTTGGGAAAAAGATAGACTGGACTGTGGTGATGTTAAGGTTATGTTGTTCGATACGAAGGCGAACGGTCCTCTGTGCTCACATGGTGAACTTCCTAATGAGAGGCAGAAGACAGACAACCCTGATGTCACCATTTTCAACCATCCATGTATGGGAAAGATTCCAAAGGCTACTGAGGCCGAGCAGGTTGCTGCTGGGTGGCCGAGTTGGCTAGCCGTGGTGGCTGGTGAAGCTATCAAAGGCTGGTTGCCAAAACGTGCAAATAACTTCATCAAGTTAGAAAAGATTGGTCAGGGAACTTACAGTAGTGTGTATAAAGCTCGCGATATCATTCAGGATAAAGTTGTGGCCTTGAAAAGGGTCAGATTCGACAATAAAGATAACGAGAGTATCAAGTTTATGGCAAGGGAAATCCTTGTTTTGCGAAGGCTTAATCATCCAAATATAGTTAAGTTGGAAGGTTTGATCACATCACAAACATCATGTACCATGTACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGGCTTGCATCACGGCCTGGCACGTCGTTCACCGAATCACAGATGAAGTGTTACATGAAGCAACTTTTGAGTGGACTTGAACACTGTCACGGTAATGGGGTTCTGCATCGAGACATAAAGGGCTCAAACCTTCTTATTGACAACAATGGCATTTTGAAGATAGCAGATTTTGGTTTGGCCGTTTTCTTTGATTCACAGTCAACAGTTCCAATGACGAGTCGTGTAATAACTCTCTGGTATCGACCACCCGAACTTTTACTTGGTTCATCTCAATATGGACCTGAAATTGATTTATGGAGCGCTGGTTGCATTCTAGGAGAGTTATATGCCGGCAAGCCTATCTTGCCAGGAAAAACAGAGGTTGAACAACTGCATAAAATATTTAAGCTATGTGGTTCCCCCTCTAAGGAATATTGGAGCAAATTGCATTTGAAGCATTCAACAAGCATGAAGCCTCCACAGTCGTATGAAAGATGTCTTCGAGAAAGCTTTAACGATTTTCCTTGTGCTGCTGTTGAGCTTATGGATACTTTGCTGTCTATAGATCCTGCTGGGCGAGGAACTGCAGCTTCGGCACTCGACAGTGAGTTCTTTACCGCAAGGCCCTTACCATGCGATCCTTCAAGTTTGCCAAAATACCCTCCCAGCAAAGAGATTGATTCAAAAATGCGAGAAGAGGAAGCAAGAAGGCAACGAGGAGTAGGTGGTGGGAGAAGCCGACCAATTGACTCAGAAGCAAAAGGACTGAAGCAATCTCGGGTAGTTCCTGCAAAGGCTAACGCTGAGTTGGTTTTATCACTACTGAGAAAACAAAGTCGTTCGAGCTCGAAGTACCGGAGTGAAGCCTGTTCTTATGGTTTGGTGTCCAAGAGAACCTCAAATTCAGGACCTATAACTCAGGGACCAAGGTTTGCAAACTCCAAAAAGGACCCGAAACGTGTTTCTACGATTCCGAGTGAGTATTTAACATCATCTGGTCCTATTGAATTTGTTTCTTACAAGCATATCAAAGAAAGAAATGGAGTTTCGAGGCCAGAATCAAGTCAAGACAAAAATCCTCCTCTATCCAGCTCTGCAGAAGAGTCCATCAAAAAGCTGAACAGAGATCAAGTTGATATGAAGAAAAGTACAGGTTCTTGTAAGTTAGAAGATTCAAAAGCCGCAGCTCTGGTAGTTAGCTAA 1848 43.45 MGCICSKVFADECSDHEHDSSKRAYSSRNQLSELKISRAGCSKSEKIWEKDRLDCGDVKVMLFDTKANGPLCSHGELPNERQKTDNPDVTIFNHPCMGKIPKATEAEQVAAGWPSWLAVVAGEAIKGWLPKRANNFIKLEKIGQGTYSSVYKARDIIQDKVVALKRVRFDNKDNESIKFMAREILVLRRLNHPNIVKLEGLITSQTSCTMYLVFEYMEHDLTGLASRPGTSFTESQMKCYMKQLLSGLEHCHGNGVLHRDIKGSNLLIDNNGILKIADFGLAVFFDSQSTVPMTSRVITLWYRPPELLLGSSQYGPEIDLWSAGCILGELYAGKPILPGKTEVEQLHKIFKLCGSPSKEYWSKLHLKHSTSMKPPQSYERCLRESFNDFPCAAVELMDTLLSIDPAGRGTAASALDSEFFTARPLPCDPSSLPKYPPSKEIDSKMREEEARRQRGVGGGRSRPIDSEAKGLKQSRVVPAKANAELVLSLLRKQSRSSSKYRSEACSYGLVSKRTSNSGPITQGPRFANSKKDPKRVSTIPSEYLTSSGPIEFVSYKHIKERNGVSRPESSQDKNPPLSSSAEESIKKLNRDQVDMKKSTGSCKLEDSKAAALVVS 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41154653 41157143 + Lag0009655.1 Lac9g2168 621094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2168 615 MobiDBLite consensus disorder prediction 428 473 - -
Lac9g2168 615 MobiDBLite consensus disorder prediction 560 602 - -
Lac9g2168 615 FunFam probable serine/threonine-protein kinase At1g54610 123 218 - -
Lac9g2168 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2168 615 MobiDBLite consensus disorder prediction 439 458 - -
Lac9g2168 615 MobiDBLite consensus disorder prediction 584 602 - -
Lac9g2168 615 MobiDBLite consensus disorder prediction 511 541 - -
Lac9g2168 615 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Lac9g2168 615 SUPERFAMILY Protein kinase-like (PK-like) 131 428 IPR011009 -
Lac9g2168 615 SMART serkin_6 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2168 615 PANTHER CELL DIVISION PROTEIN KINASE 136 420 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lac9g2168 615 MobiDBLite consensus disorder prediction 568 583 - -
Lac9g2168 615 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2168 615 CDD STKc_CDK9_like 136 420 - -
Lac9g2168 615 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524(InterPro)
Lac9g2168 615 FunFam probable serine/threonine-protein kinase At1g54610 219 460 - -
Lac9g2168 615 Pfam Protein kinase domain 138 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2168 615 Gene3D Transferase(Phosphotransferase) domain 1 219 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g3006 Lac-Chr6:47643367 Lac9g2168 Lac-Chr9:41154653 8.60E-34 dispersed
Lac9g2168 Lac-Chr9:41154653 Lac9g2934 Lac-Chr9:47124427 2.50E-94 dispersed
Lac9g2168 Lac-Chr9:41154653 Lac9g2169 Lac-Chr9:41161338 8.70E-164 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86444 PF00069 Pkinase 9.40E-68 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2168 - - - 0.0