Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2169 ATGGGTTGCCAATTTTCCAGGCCTTCTGTTGATAAAGATGGTCAGAGCAGAGCCACTGAGAAATCTCATTCACAAAAGACTCAACGAGTTAATTTATCTAGAAAAGAAGAGGATGTGCGATTGAATTCTCTGAAAAGAGACGAAGGTGTTCGAATAAATTCCTCACAGAGAATTGATAGTATTCGATCAAAGGTGAAGACAGATGGAGGTGACATGAAAGTTGCTTATTTGGATAAGAAAGTCAACGGCTCAAATAGGGTACACGATGATCAAATTGAGAAAAAGAAGAGGGAGAGATTGGAAGCAGCCATTTCTGCTAATTATCCTGGAAAAGGAAGCATCCCAAAGGCAGTGGAAGCAGAGCAAGTTGCAGCTGGTTGGCCGAGCTGGCTCTCATCTGTGGCCGGTGAAGCGCTCGAGGGATGGCTGCCACGAAAAGCTGAGACTTTCGAGAAACTAGACAAGATAGGACAAGGGACATATAGTAATGTTTACAAGGCTCGTGATATCATTAACGGTAAACTTGTCGCTCTAAAACGAGTTCGGTTCGATAATCTTGATGTGGAGAGTGTCAAGTTTATGGCCCGGGAAATCCTTATCCTACGTAGGCTTGATCATCCAAATGTTATAAAATTGGAAGGCTTGATTACATCTCCACGATCATGTAGCTTGTACCTCGTTTTTGAGTATATGGAACATGATCTTACAGGGCTCGCTTCTCGGCCTGGCGTCAAGTTCAGCGAACCACAGGTTAAATGCTATATGCAACAACTTCTAAGGGGACTTGATTATTGTCACAGTCGTGGTGTCCTCCACCGCGATATAAAGGGTTCAAATCTCCTAATCGACGACAATGGTATCTTGAAGATTGCAGATTTTGGATTAGCAAGTCCTTTTGACCCTCGTAATCGTGTTCCCTTAACAAGTCGTGTTGTGACTTTATGGTACCGACCACCCGAACTTCTGCTTGGAGCTTCCCATTATGGGGTTGCAGTGGACCTGTGGAGTACTGGTTGCATACTAGCTGAGCTATATGCTGGGAAGCCTATCTTACCTGGAAAAACTGAGGTTGAACAGTTGCATAAGATATTTAAACTCTGTGGGTCGCCAGCTGAGGATTATTGGAGGAAATTGCAGTTACCTCATTCAGCTGGCTTCAAGACAGCTCAGCCATACCGACGTTGTATTGGAGAGATGCTCAAGGATTTCCCATCTGCTGCGGTCGCTCTTGTGGATAAGTTGCTTTCTGTAGATCCTGCTCATCGAGGAACTGCAGCTGCTGCTCTAAACAGTGAGTTTTTTTCGACTAAACCTCTCGCTTGCGAACCTTCGAGTTTGCCCAAATATCCTCCCAGCAAAGAGATCGATGCGAAATTCCACGGCTGCAGAAGGCAGTCAAGAGCTGAAGGCAAAGACCCTAAAGATTATGTGGAAGGAAGGCGATCTAAAGAAGCACACCTTAATCTTGCTCTCAATGCCAAGGATGAAGCAAACATGTTGATGCAGAAAAGGCAAGGCCATTCGAGTTTGAAGGGCCGGATCGGAGTGTTCAATCCGCGCGGGGACGAAACAGTTTCTGGCTTTTTGATTCCTCCACCCAAACAAAACCAATCTGTCTCAGAAATTTGCTCAGGTACAGGCAGGATTTCACATTCAGGACCGCTAATTAGCAAACCAGATTGGATGAAATCTGGAATGCAACTCGATGATCATTCGATGGCGCTCGATGGATTGAATCTCTCAGTATTATCCCGTTTAGTAGCAACAAGGTCTAATACATCTGATCATCCCTATGATAGACCTGGTCCATCACGATCAGAAGTAGGCAGATTGCCCGACTTCGTTAGGGAGTCGGAGTCAGCAAGAAAGCAAGACCGAATATTTTACACACACCGAGTTGCAGATTCATACCGAGTAGACAATGACAAAGGCTGTGCTAAAGAACAGTCCCTGTTTCCTCATGGGACAGACATGAACAAGCTCTACACTTCTGGTCCAATCCTTGGTCCATCAAACAACTTAGATATGATTCTGAAAGAGCGAGACCGACAGATTCAAGAATACGCCCGACAAGCACGACACGGTAAAGCTACCAACAGTCAGTTAAAGGGTGCAAGAACAACAACTGGAAAGCATCTCATGTCAAGCCATGGAATGTGA 2160 45.05 MGCQFSRPSVDKDGQSRATEKSHSQKTQRVNLSRKEEDVRLNSLKRDEGVRINSSQRIDSIRSKVKTDGGDMKVAYLDKKVNGSNRVHDDQIEKKKRERLEAAISANYPGKGSIPKAVEAEQVAAGWPSWLSSVAGEALEGWLPRKAETFEKLDKIGQGTYSNVYKARDIINGKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYCHSRGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPRNRVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYAGKPILPGKTEVEQLHKIFKLCGSPAEDYWRKLQLPHSAGFKTAQPYRRCIGEMLKDFPSAAVALVDKLLSVDPAHRGTAAAALNSEFFSTKPLACEPSSLPKYPPSKEIDAKFHGCRRQSRAEGKDPKDYVEGRRSKEAHLNLALNAKDEANMLMQKRQGHSSLKGRIGVFNPRGDETVSGFLIPPPKQNQSVSEICSGTGRISHSGPLISKPDWMKSGMQLDDHSMALDGLNLSVLSRLVATRSNTSDHPYDRPGPSRSEVGRLPDFVRESESARKQDRIFYTHRVADSYRVDNDKGCAKEQSLFPHGTDMNKLYTSGPILGPSNNLDMILKERDRQIQEYARQARHGKATNSQLKGARTTTGKHLMSSHGM 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41161338 41164463 + Lag0009656.1 Lac9g2169 621095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2169 719 FunFam probable serine/threonine-protein kinase At1g54610 137 232 - -
Lac9g2169 719 Gene3D Transferase(Phosphotransferase) domain 1 233 472 - -
Lac9g2169 719 ProSiteProfiles Protein kinase domain profile. 150 434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2169 719 ProSitePatterns Protein kinases ATP-binding region signature. 156 179 IPR017441 GO:0005524(InterPro)
Lac9g2169 719 SMART serkin_6 150 434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2169 719 FunFam probable serine/threonine-protein kinase At1g54610 233 472 - -
Lac9g2169 719 MobiDBLite consensus disorder prediction 692 719 - -
Lac9g2169 719 MobiDBLite consensus disorder prediction 693 719 - -
Lac9g2169 719 SUPERFAMILY Protein kinase-like (PK-like) 145 439 IPR011009 -
Lac9g2169 719 CDD STKc_CDK9_like 150 434 - -
Lac9g2169 719 MobiDBLite consensus disorder prediction 591 610 - -
Lac9g2169 719 MobiDBLite consensus disorder prediction 13 40 - -
Lac9g2169 719 MobiDBLite consensus disorder prediction 1 40 - -
Lac9g2169 719 PANTHER CELL DIVISION PROTEIN KINASE 149 434 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Lac9g2169 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2169 719 Pfam Protein kinase domain 150 434 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2169 719 Gene3D Phosphorylase Kinase; domain 1 137 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0838 Lac-Chr7:6765851 Lac9g2169 Lac-Chr9:41161338 3.00E-163 dispersed
Lac8g2723 Lac-Chr8:44674473 Lac9g2169 Lac-Chr9:41161338 1.80E-133 dispersed
Lac9g2169 Lac-Chr9:41161338 Lac9g2934 Lac-Chr9:47124427 4.50E-95 dispersed
Lac9g2168 Lac-Chr9:41154653 Lac9g2169 Lac-Chr9:41161338 8.70E-164 tandem
Lac5g2461 Lac-Chr5:43197045 Lac9g2169 Lac-Chr9:41161338 9.80E-204 transposed
Lac10g0961 Lac-Chr10:7689394 Lac9g2169 Lac-Chr9:41161338 4.00E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86445 PF00069 Pkinase 1.20E-67 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2169 - - - 0.0