Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g2175 | ATGGGGTCTCGACGCTTTGCTGGTTTTGTGGCTTTGGCTTTACTTGGGGCTATGGTTTGTTCTTCTGAAGCTTACAGATTCTATGTTGGTGGCAGAGATGGCTGGGTTTTGAACCCTTCTGAGACCTTCAATCATTGGGCTGAACGTAATAGGTTTCAAGTCAATGATACTCTTTATTTCAAGTACAAAAACGAGACGGATTCAGTGTTGGTTGTAAGCAAGGACGATTACAATTCATGCAACACCAAAAACCCAATTATTTCTCTAAAAGATGGTGAATCGATCTTCAAATTTGGTCACTCTGGTCCATTTTATTTCATCAGTGGAAATGCCGATGCCTGCCAAAAGGGCCAAAAGCTCATCGTTGTGGTTCTCGCTGTCAGACACAATCAAAATCAACACCACGCTCAGCCGCCGTGTTCTTCTTCTCCGGTGCCGCCGCCGTCGCAACCTCAGACCCCCACTGCACAGTCACCGGAAAAACCTGGTTCGCCGGAATCCGCCGTCGCGCCAGTTCCGGCTCCGGCCAAAAGTTCCGCTTTTAGAGGCCCAGTTACATTCAGCTTCTGTCTAGGGATAATCAATGCTGTTCTTGCAAGCGGTTTTTTTGTGGGTTTTCTTTAA | 624 | 46.96 | MGSRRFAGFVALALLGAMVCSSEAYRFYVGGRDGWVLNPSETFNHWAERNRFQVNDTLYFKYKNETDSVLVVSKDDYNSCNTKNPIISLKDGESIFKFGHSGPFYFISGNADACQKGQKLIVVVLAVRHNQNQHHAQPPCSSSPVPPPSQPQTPTAQSPEKPGSPESAVAPVPAPAKSSAFRGPVTFSFCLGIINAVLASGFFVGFL | 207 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 41218947 | 41220186 | - | Lag0009662.1 | Lac9g2175 | 621101 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g2175 | 207 | Gene3D | - | 23 | 129 | IPR008972 | - | |
| Lac9g2175 | 207 | SUPERFAMILY | Cupredoxins | 24 | 125 | IPR008972 | - | |
| Lac9g2175 | 207 | FunFam | Early nodulin-like protein 1 | 24 | 129 | - | - | |
| Lac9g2175 | 207 | MobiDBLite | consensus disorder prediction | 140 | 155 | - | - | |
| Lac9g2175 | 207 | CDD | OsENODL1_like | 25 | 125 | IPR041846 | - | |
| Lac9g2175 | 207 | ProSiteProfiles | Phytocyanin domain profile. | 25 | 126 | IPR003245 | GO:0009055(InterPro) | |
| Lac9g2175 | 207 | MobiDBLite | consensus disorder prediction | 133 | 173 | - | - | |
| Lac9g2175 | 207 | Pfam | Plastocyanin-like domain | 35 | 118 | IPR003245 | GO:0009055(InterPro) | |
| Lac9g2175 | 207 | PANTHER | BLUE COPPER PROTEIN | 20 | 148 | IPR039391 | GO:0009055(InterPro)|GO:0046658(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g0590 | Lac-Chr6:4927116 | Lac9g2175 | Lac-Chr9:41218947 | 3.80E-24 | dispersed | |
| Lac10g0209 | Lac-Chr10:1626367 | Lac9g2175 | Lac-Chr9:41218947 | 4.30E-20 | transposed | |
| Lac2g1369 | Lac-Chr2:11549615 | Lac9g2175 | Lac-Chr9:41218947 | 3.10E-30 | transposed | |
| Lac5g0132 | Lac-Chr5:1076138 | Lac9g2175 | Lac-Chr9:41218947 | 6.40E-20 | transposed | |
| Lac8g2534 | Lac-Chr8:43137326 | Lac9g2175 | Lac-Chr9:41218947 | 4.50E-22 | transposed | |
| Lac2g1256 | Lac-Chr2:10287733 | Lac9g2175 | Lac-Chr9:41218947 | 1.50E-36 | wgd |
Pathway information