Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2175 ATGGGGTCTCGACGCTTTGCTGGTTTTGTGGCTTTGGCTTTACTTGGGGCTATGGTTTGTTCTTCTGAAGCTTACAGATTCTATGTTGGTGGCAGAGATGGCTGGGTTTTGAACCCTTCTGAGACCTTCAATCATTGGGCTGAACGTAATAGGTTTCAAGTCAATGATACTCTTTATTTCAAGTACAAAAACGAGACGGATTCAGTGTTGGTTGTAAGCAAGGACGATTACAATTCATGCAACACCAAAAACCCAATTATTTCTCTAAAAGATGGTGAATCGATCTTCAAATTTGGTCACTCTGGTCCATTTTATTTCATCAGTGGAAATGCCGATGCCTGCCAAAAGGGCCAAAAGCTCATCGTTGTGGTTCTCGCTGTCAGACACAATCAAAATCAACACCACGCTCAGCCGCCGTGTTCTTCTTCTCCGGTGCCGCCGCCGTCGCAACCTCAGACCCCCACTGCACAGTCACCGGAAAAACCTGGTTCGCCGGAATCCGCCGTCGCGCCAGTTCCGGCTCCGGCCAAAAGTTCCGCTTTTAGAGGCCCAGTTACATTCAGCTTCTGTCTAGGGATAATCAATGCTGTTCTTGCAAGCGGTTTTTTTGTGGGTTTTCTTTAA 624 46.96 MGSRRFAGFVALALLGAMVCSSEAYRFYVGGRDGWVLNPSETFNHWAERNRFQVNDTLYFKYKNETDSVLVVSKDDYNSCNTKNPIISLKDGESIFKFGHSGPFYFISGNADACQKGQKLIVVVLAVRHNQNQHHAQPPCSSSPVPPPSQPQTPTAQSPEKPGSPESAVAPVPAPAKSSAFRGPVTFSFCLGIINAVLASGFFVGFL 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41218947 41220186 - Lag0009662.1 Lac9g2175 621101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2175 207 Gene3D - 23 129 IPR008972 -
Lac9g2175 207 SUPERFAMILY Cupredoxins 24 125 IPR008972 -
Lac9g2175 207 FunFam Early nodulin-like protein 1 24 129 - -
Lac9g2175 207 MobiDBLite consensus disorder prediction 140 155 - -
Lac9g2175 207 CDD OsENODL1_like 25 125 IPR041846 -
Lac9g2175 207 ProSiteProfiles Phytocyanin domain profile. 25 126 IPR003245 GO:0009055(InterPro)
Lac9g2175 207 MobiDBLite consensus disorder prediction 133 173 - -
Lac9g2175 207 Pfam Plastocyanin-like domain 35 118 IPR003245 GO:0009055(InterPro)
Lac9g2175 207 PANTHER BLUE COPPER PROTEIN 20 148 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2175 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0590 Lac-Chr6:4927116 Lac9g2175 Lac-Chr9:41218947 3.80E-24 dispersed
Lac10g0209 Lac-Chr10:1626367 Lac9g2175 Lac-Chr9:41218947 4.30E-20 transposed
Lac2g1369 Lac-Chr2:11549615 Lac9g2175 Lac-Chr9:41218947 3.10E-30 transposed
Lac5g0132 Lac-Chr5:1076138 Lac9g2175 Lac-Chr9:41218947 6.40E-20 transposed
Lac8g2534 Lac-Chr8:43137326 Lac9g2175 Lac-Chr9:41218947 4.50E-22 transposed
Lac2g1256 Lac-Chr2:10287733 Lac9g2175 Lac-Chr9:41218947 1.50E-36 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1369 . 11 140 Phytocyanin Superfamily AT3G20570 57.3 3.5e-37 152.5
Lac10g0209 . 10 134 Phytocyanin Superfamily AT1G48940 57.9 4.0e-37 152.1
Lac8g0987 . 30 176 Phytocyanin Superfamily AT3G01070 53.0 5.8e-38 154.8
Lac6g0590 . 7 170 Phytocyanin Superfamily AT2G25060 55.4 4.9e-46 181.8
Lac8g0987 . 29 183 Phytocyanin Superfamily AT5G15350 52.3 2.3e-45 179.5
Lac6g0590 . 8 170 Phytocyanin Superfamily AT4G31840 55.8 9.5e-47 184.1
Lac10g0209 . 26 134 Phytocyanin Superfamily AT3G18590 64.5 1.6e-36 150.2
Lac9g2175 . 15 132 Phytocyanin Superfamily AT4G32490 56.8 2.2e-37 153.3
Lac9g2175 . 14 148 Phytocyanin Superfamily AT4G28365 53.3 1.3e-36 150.6
Lac9g2175 . 15 132 Phytocyanin Superfamily AT4G32490 56.8 2.2e-37 153.3
Lac10g0209 . 26 134 Phytocyanin Superfamily AT3G18590 64.5 1.6e-36 150.2
Lac10g0209 . 10 134 Phytocyanin Superfamily AT1G48940 57.9 4.0e-37 152.1
Lac2g1369 . 11 140 Phytocyanin Superfamily AT3G20570 57.3 3.5e-37 152.5
Lac6g0590 . 18 137 Phytocyanin Superfamily AT5G57920 52.9 6.3e-37 151.8
Lac6g0590 . 9 170 Phytocyanin Superfamily AT5G25090 52.7 2.2e-41 166.4
Lac6g0590 . 7 170 Phytocyanin Superfamily AT2G25060 55.4 4.9e-46 181.8
Lac6g0590 . 8 170 Phytocyanin Superfamily AT4G31840 55.8 9.5e-47 184.1
Lac8g0987 . 30 176 Phytocyanin Superfamily AT3G01070 53.0 5.8e-38 154.8
Lac8g0987 . 29 183 Phytocyanin Superfamily AT5G15350 52.3 2.3e-45 179.5
Lac9g2763 . 22 237 Phytocyanin Superfamily AT1G08500 54.1 1.1e-55 214.2
Lac3g1248 . 31 146 Phytocyanin Superfamily AT2G27035 56.9 3.7e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002701 2 2 1 2 4 1 2 2 1 2 2 2 2 2 2 2 1 1 2 2 2 2 1 2 2 2 2 1 2 1 54