Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2194 ATGGAGGATCAGCGAGATGATGTTGCACCATCAGACCAAGGGCCTTCCAATGCTTCCTGGTGGTCTTCTGATTTCGTGGAGAAATTTGGATCTGTTTCTTTGGGTCCTCGGGAAGATATTGTAAGTGAAAAAGAAGAGATCATCAATTCTGACCAAGATGTGTTGTTGTCGCCTCAAAGTGCATCTCAAATTCTCTGGCGTACTGGAATGCTTTGTGAACCAATTCCAGATGGTTTCTATTCTGTTATTCCGGATAAAAGGCTAAGAGAGCGGTTCCACAGTATTCCCTCGCTAGACGAGCTTCGTGCTTTGGAGGCTGAAGGTTACAGGAATGATGTTATTCTTGTGGAGACGGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAATTCAAATATAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTTTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGCTGCTGTAGAAGAAACCTCCCACTTGTTCGAGGATAGAGGCATTCAATTGCTTGGACAAATAAAATTTGGTTCATGCCGCCCAAGAGCTATCTTATTTAAGGTTCTGGCGGACACTGTAGGGCTAGAAAGCCGTCTCATGGTGGGCTTGCCAAATGAGGGGGCCATTGGGTGCGTGGACTCATACAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTTATGCGATTTCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCAATTTTCATGACCCATGTTTCTGCTGCTGGGGAAAGTGATTCTGCAGAAAACGACTCCTGTGATTCACCACTAGAACCCAATAGTCCTCTTTATGGGGTTTCAGAGAGAATTGATCCTGACAGTGTTGAAAAAGATGAGAGCCTTCAGTTCCACAGAAAATTTGAAGGAGCTTCAAATGCATATGGTCCTTCATTGCGCAACATGATGTTACGATCAAGTACAACACTTGACAGGAAATTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAACACCCATCATTCCGGGCGCGTGGCCGGTCCATGCTTAGTGGGGATAGAAAAGCCTTCAGAGATTTTTCGGATGATGTCTCTACTTCAAGCTACAGATCAGATGGTGCTTCAACTTCAGAAGTACGTCGAATAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTGCGGGCAATGAATGAAACACTGAAGCAAAATCGTCTTTTGAGAGGAGAAGGAGATGACAGGTCGTTCTCCCACCTTTCAAATGAAAGAAATAGTAGTTCAGATGTTCGGAGAAATGATCCAGTGGGTTCTCAAAGAGCAATATCATTACCATCATCGCCACATGTGTATAGGGGTCAAACCTCTGGAAGTGAGCGTTCAGCATTTGGGAATGATGATTTAACCTCAAAATGGACTAAAGTTCTTGAATCCTTCTCCTTGAACGACAAACCACTATTACCTTACCCAGAGTGGAACATTGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATTGGTTTTTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGAACAGATGTGGCAATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAAGACTTCTGTAATGAGATATCAATTCTTAGTCGTCTTCGACATCCTAATGTTATATTGTTTCTGGGTGCATGCACAAAGCCACCACGCTTATCAATGATCACCGAATACATGGAAATGGGTTCCCTGTATTCCTTGATTCATTTGAGTGGTCAGAAAAAAAAACTTAGCTGGCGAAGGAGACTGAAGATGTTGCGTGACATATGCAGGGGCTTGATGTGCATACATCGAATGAAAATAGCTCATCGGGACCTAAAAAGTGCAAATTGCCTAGTGAACAAGCATTGGACCGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGACTGAGGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTCTTCCGAAACGAACCCTTCACTGAAAAGTGTGATATTTTCAGCCTAGGAGTCATTATGTGGGAGCTTTGCACGCTAAGTCGACCGTGGGAGGGTGTTCCACCGGAGAGGGTAGTTTATGCTGTTGGCACCGAGGGATCCCGCCTAGAGATTCCTGAAGGTCCACTTGGCAGGCTTATATCAGATTGTTGGGCAGAACCAAATGAACGGCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTGGACTGCGAGTACTCCCTCTCTTGA 2394 43.94 MEDQRDDVAPSDQGPSNASWWSSDFVEKFGSVSLGPREDIVSEKEEIINSDQDVLLSPQSASQILWRTGMLCEPIPDGFYSVIPDKRLRERFHSIPSLDELRALEAEGYRNDVILVETEKDKKLSMLKQLILTLVKGLNSNIAAIIKKIAGLVSDFYKRPILESPAKAAVEETSHLFEDRGIQLLGQIKFGSCRPRAILFKVLADTVGLESRLMVGLPNEGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHVSAAGESDSAENDSCDSPLEPNSPLYGVSERIDPDSVEKDESLQFHRKFEGASNAYGPSLRNMMLRSSTTLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSSYRSDGASTSEVRRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLLRGEGDDRSFSHLSNERNSSSDVRRNDPVGSQRAISLPSSPHVYRGQTSGSERSAFGNDDLTSKWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTEAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLSRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCEYSLS 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41399966 41407868 + Lag0009681.1 Lac9g2194 621120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2194 797 SMART serkin_6 541 790 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2194 797 ProSiteProfiles Protein kinase domain profile. 541 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2194 797 Pfam Ethylene-responsive protein kinase Le-CTR1 59 254 - -
Lac9g2194 797 CDD STKc_MAP3K-like 547 789 - -
Lac9g2194 797 SUPERFAMILY Protein kinase-like (PK-like) 518 789 IPR011009 -
Lac9g2194 797 MobiDBLite consensus disorder prediction 448 505 - -
Lac9g2194 797 Gene3D Transferase(Phosphotransferase) domain 1 620 796 - -
Lac9g2194 797 MobiDBLite consensus disorder prediction 1 21 - -
Lac9g2194 797 FunFam Serine/threonine-protein kinase isoform 1 532 619 - -
Lac9g2194 797 Pfam Protein tyrosine and serine/threonine kinase 543 789 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2194 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2194 797 MobiDBLite consensus disorder prediction 362 385 - -
Lac9g2194 797 MobiDBLite consensus disorder prediction 273 293 - -
Lac9g2194 797 ProSitePatterns Protein kinases ATP-binding region signature. 547 568 IPR017441 GO:0005524(InterPro)
Lac9g2194 797 PANTHER SERINE-THREONINE PROTEIN KINASE 325 789 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac9g2194 797 MobiDBLite consensus disorder prediction 473 505 - -
Lac9g2194 797 MobiDBLite consensus disorder prediction 448 472 - -
Lac9g2194 797 Gene3D Phosphorylase Kinase; domain 1 534 619 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g2146 Lac-Chr3:26804401 Lac9g2194 Lac-Chr9:41399966 1.60E-74 dispersed
Lac9g2194 Lac-Chr9:41399966 Lac9g2245 Lac-Chr9:41820390 2.10E-32 dispersed
Lac9g2194 Lac-Chr9:41399966 Lac10g0283 Lac-Chr10:2144811 5.40E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86447 PF07714 PK_Tyr_Ser-Thr 4.90E-59 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2194 - - - 0.0