Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2220 ATGAAATTCGAAGAGCAGAATCTCAAGCAACACTCTCAACAGATTTGCAGGACTATTGAGGTCGATACGATTGATCACCATCGTACTATTTCGTCGCTGCTCGTAATGGAAGCTTCCGAAGACTGCGAGAAGGATGGTGACGGCCTCTATATTCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCTGACTCTGCCAACTTCTCCTTCCTCCAAACCCTAGGCCTCCGTTCCATTATATGTCTATGTCCGGAGCCGTATCCGGAGCACAACATGGAGTTCCTCAAGGCCAACGGGATTAGATTGTATCAATTTGGAATTGAAAGCTATAAGGAGCCTTTCGTGAACATCCCAGATGGTATGATTCGTGAAGCACTGAAAGTTGTCCTTGACGATAGGAATCATCCAGTTCTCATACATTGCAAGAGAGGAAAGCATCGGACGGGTTGTCTCGTGGGATGTCTGAGAAAATTGCAGAGGTGGTGCCTCACTTCTGTGTTTGATGAGTACCAGAGGTTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTTATGGAATTGTTCGATATCTCTGACTTGAAGCATCTCCCCATGTCATTCTCATGCTCAAAGAGGTGA 639 46.17 MKFEEQNLKQHSQQICRTIEVDTIDHHRTISSLLVMEASEDCEKDGDGLYIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYPEHNMEFLKANGIRLYQFGIESYKEPFVNIPDGMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISDLKHLPMSFSCSKR 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41611281 41613787 - Lag0009707.1 Lac9g2220 621146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2220 212 Pfam Tyrosine phosphatase family 50 202 IPR004861 -
Lac9g2220 212 ProSiteProfiles Dual specificity protein phosphatase domain profile. 55 209 IPR020422 GO:0006470(InterPro)
Lac9g2220 212 ProSitePatterns Tyrosine specific protein phosphatases active site. 145 155 IPR016130 GO:0016311(InterPro)
Lac9g2220 212 Gene3D Protein tyrosine phosphatase superfamily 50 199 IPR029021 -
Lac9g2220 212 FunFam probable tyrosine-protein phosphatase At1g05000 49 199 - -
Lac9g2220 212 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 197 IPR029021 -
Lac9g2220 212 PRINTS Plant and fungal dual specificity phosphatase signature 87 100 IPR020428 GO:0016791(InterPro)
Lac9g2220 212 PRINTS Plant and fungal dual specificity phosphatase signature 50 67 IPR020428 GO:0016791(InterPro)
Lac9g2220 212 PRINTS Plant and fungal dual specificity phosphatase signature 123 137 IPR020428 GO:0016791(InterPro)
Lac9g2220 212 PRINTS Plant and fungal dual specificity phosphatase signature 106 120 IPR020428 GO:0016791(InterPro)
Lac9g2220 212 CDD PFA-DSP_Siw14 49 196 - -
Lac9g2220 212 PANTHER TYROSINE-PROTEIN PHOSPHATASE 23 205 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1690 Lac-Chr3:16788545 Lac9g2220 Lac-Chr9:41611281 4.50E-60 dispersed
Lac12g0819 Lac-Chr12:8491638 Lac9g2220 Lac-Chr9:41611281 1.10E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2220 K18045 - csv:101222170 392.119