Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g2223 | ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATATCTCGGAGGCGCTATGGCGGTTGGAAATCGGTGATAATCAAGACGGAGGCGATGCGGCAGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCTGATTGCTTATATTATATGAGAACTGGGTCTTGTAGCTATGGAAGTAATTGTCGTTTTAATCATCCTGTCTACGTTGCTCAGGGTGCTCTGTATAATGGGGAACTGCCAGAAAGAATTGGGCAACCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAATATTTTAGGTCTTCCCATGCGACAGGAAGAAAAGTCGTGCCCTTATTATTTGCGCACTGGATTGTGTAAATTTGGAGTTTCATGCAAGTTCAATCATCCCCAGCCATCACCAGTTGGAAATATGTTACCTCAAGCTAGACCTGGTGCTTTGGGTTCTACAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTGGTGGAATTCCTGCTTGGTCATTGCCTAGAGTACAATATATGCCTGGCCCATGTGTACAAGGCCAGCAATCTTATGTGCCTGTCTTGGTTTCTCCATCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTACGTGGGCAATGTCAGTCCTGTTCTTCCCAATATTGGTTATAATTCTGTCAATTTGGACGAGTCGTATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCCAGCACTACCTGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAATGGCACCTGCAAATATGGATCTGATTGCAAGTTCCATCATCCGAAACAAAGAATTGCACAATCAGCAACAAATGCGCTTGGGCTTCCTTCAAGACCGGGGCAAGCTGTATGTTCATACTACAATATGTATGGGCTCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAATTATGGCTTCACCCTGCCTGTGCTTGATTCATCTTTTATAAAGTATCCGAGCAACAACTTTACGATGCCCTCACACGAGACCTTGCCCCAGACGTTATCTAAATCTTCTGAATGGGTCCAGAAAGCTGATGGTCCAAACAACAAACGGCGAACTACCGATACAAAAGTTGTAGACGAAACGGCTGAAGAGGCCACCTCAGTTTCATGCTCATTACCACCAGGTGGTTCAGAAACTCTACAAGATCATCAATCTGGTTGA | 1314 | 45.05 | MPDNLQVQRNAVPNQSPDISEALWRLEIGDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGLCKFGVSCKFNHPQPSPVGNMLPQARPGALGSTGTPFMPSSGLPYAGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVGNVSPVLPNIGYNSVNLDESYSNGQLALSTSTPALPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNALGLPSRPGQAVCSYYNMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLDSSFIKYPSNNFTMPSHETLPQTLSKSSEWVQKADGPNNKRRTTDTKVVDETAEEATSVSCSLPPGGSETLQDHQSG | 437 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 41657900 | 41661142 | + | Lag0009710.1 | Lac9g2223 | 621149 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g2223 | 437 | Gene3D | - | 274 | 354 | - | - | |
| Lac9g2223 | 437 | Gene3D | - | 46 | 117 | - | - | |
| Lac9g2223 | 437 | Gene3D | - | 118 | 170 | - | - | |
| Lac9g2223 | 437 | PANTHER | PROTEIN PHOSPHATASE RELATED | 16 | 347 | IPR050974 | GO:0003729(PANTHER) | |
| Lac9g2223 | 437 | MobiDBLite | consensus disorder prediction | 378 | 437 | - | - | |
| Lac9g2223 | 437 | SUPERFAMILY | CCCH zinc finger | 132 | 161 | IPR036855 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | MobiDBLite | consensus disorder prediction | 413 | 437 | - | - | |
| Lac9g2223 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 91 | 115 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 278 | 303 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 321 | 345 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 47 | 72 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 137 | 160 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | SUPERFAMILY | CCCH zinc finger | 93 | 117 | IPR036855 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | SUPERFAMILY | CCCH zinc finger | 51 | 73 | IPR036855 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 276 | 304 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 319 | 347 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 88 | 116 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | SUPERFAMILY | CCCH zinc finger | 322 | 347 | IPR036855 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | SUPERFAMILY | CCCH zinc finger | 280 | 304 | IPR036855 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | SMART | c3hfinal6 | 88 | 115 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | SMART | c3hfinal6 | 135 | 160 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | SMART | c3hfinal6 | 276 | 303 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | SMART | c3hfinal6 | 319 | 346 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | MobiDBLite | consensus disorder prediction | 378 | 394 | - | - | |
| Lac9g2223 | 437 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 161 | IPR000571 | GO:0046872(InterPro) | |
| Lac9g2223 | 437 | MobiDBLite | consensus disorder prediction | 395 | 412 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac7g0858 | Lac-Chr7:6974025 | Lac9g2223 | Lac-Chr9:41657900 | 2.80E-16 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24472 | PF00642 | zf-CCCH | 5.10E-08 | CL0537 | Lac | TF |
Pathway information