Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2223 ATGCCAGATAATCTGCAAGTTCAGAGGAATGCTGTTCCTAACCAATCCCCTGATATCTCGGAGGCGCTATGGCGGTTGGAAATCGGTGATAATCAAGACGGAGGCGATGCGGCAGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCTGATTGCTTATATTATATGAGAACTGGGTCTTGTAGCTATGGAAGTAATTGTCGTTTTAATCATCCTGTCTACGTTGCTCAGGGTGCTCTGTATAATGGGGAACTGCCAGAAAGAATTGGGCAACCCGACTGTGAGTATTTTCTGAAGACAGGGACCTGTAAATATGGAGGATCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAATATTTTAGGTCTTCCCATGCGACAGGAAGAAAAGTCGTGCCCTTATTATTTGCGCACTGGATTGTGTAAATTTGGAGTTTCATGCAAGTTCAATCATCCCCAGCCATCACCAGTTGGAAATATGTTACCTCAAGCTAGACCTGGTGCTTTGGGTTCTACAGGCACTCCATTCATGCCTTCATCTGGTTTACCATATGCTGGTGGAATTCCTGCTTGGTCATTGCCTAGAGTACAATATATGCCTGGCCCATGTGTACAAGGCCAGCAATCTTATGTGCCTGTCTTGGTTTCTCCATCACAGGGTGCCATAGCTGCTCAAGACTGGAACACTTACGTGGGCAATGTCAGTCCTGTTCTTCCCAATATTGGTTATAATTCTGTCAATTTGGACGAGTCGTATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCCAGCACTACCTGATCGACCTGATCAACCAGAATGCCGTTATTTTATGAACAATGGCACCTGCAAATATGGATCTGATTGCAAGTTCCATCATCCGAAACAAAGAATTGCACAATCAGCAACAAATGCGCTTGGGCTTCCTTCAAGACCGGGGCAAGCTGTATGTTCATACTACAATATGTATGGGCTCTGCAAGTATGGCCCAAGTTGTAAATTTGACCACCCATCTGCAACATATCCTTATAATTATGGCTTCACCCTGCCTGTGCTTGATTCATCTTTTATAAAGTATCCGAGCAACAACTTTACGATGCCCTCACACGAGACCTTGCCCCAGACGTTATCTAAATCTTCTGAATGGGTCCAGAAAGCTGATGGTCCAAACAACAAACGGCGAACTACCGATACAAAAGTTGTAGACGAAACGGCTGAAGAGGCCACCTCAGTTTCATGCTCATTACCACCAGGTGGTTCAGAAACTCTACAAGATCATCAATCTGGTTGA 1314 45.05 MPDNLQVQRNAVPNQSPDISEALWRLEIGDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVAQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGLCKFGVSCKFNHPQPSPVGNMLPQARPGALGSTGTPFMPSSGLPYAGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVGNVSPVLPNIGYNSVNLDESYSNGQLALSTSTPALPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNALGLPSRPGQAVCSYYNMYGLCKYGPSCKFDHPSATYPYNYGFTLPVLDSSFIKYPSNNFTMPSHETLPQTLSKSSEWVQKADGPNNKRRTTDTKVVDETAEEATSVSCSLPPGGSETLQDHQSG 437
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 41657900 41661142 + Lag0009710.1 Lac9g2223 621149
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2223 437 Gene3D - 274 354 - -
Lac9g2223 437 Gene3D - 46 117 - -
Lac9g2223 437 Gene3D - 118 170 - -
Lac9g2223 437 PANTHER PROTEIN PHOSPHATASE RELATED 16 347 IPR050974 GO:0003729(PANTHER)
Lac9g2223 437 MobiDBLite consensus disorder prediction 378 437 - -
Lac9g2223 437 SUPERFAMILY CCCH zinc finger 132 161 IPR036855 GO:0046872(InterPro)
Lac9g2223 437 MobiDBLite consensus disorder prediction 413 437 - -
Lac9g2223 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 345 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 47 72 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 160 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872(InterPro)
Lac9g2223 437 SUPERFAMILY CCCH zinc finger 51 73 IPR036855 GO:0046872(InterPro)
Lac9g2223 437 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 SUPERFAMILY CCCH zinc finger 322 347 IPR036855 GO:0046872(InterPro)
Lac9g2223 437 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 SUPERFAMILY CCCH zinc finger 280 304 IPR036855 GO:0046872(InterPro)
Lac9g2223 437 SMART c3hfinal6 88 115 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 SMART c3hfinal6 135 160 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 SMART c3hfinal6 276 303 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 SMART c3hfinal6 319 346 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 MobiDBLite consensus disorder prediction 378 394 - -
Lac9g2223 437 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872(InterPro)
Lac9g2223 437 MobiDBLite consensus disorder prediction 395 412 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0858 Lac-Chr7:6974025 Lac9g2223 Lac-Chr9:41657900 2.80E-16 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24472 PF00642 zf-CCCH 5.10E-08 CL0537 Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2223 - - - 0.0