Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2224 ATGCGGCGAGGCAGGCCCTCAGATCCATTCACAGCGACAGAAGTACCGAAATCCACCGTTCAGCCCGAAAATCCTCTCAAAGAGATCCGATACAGAGGCGTTCGGAAGCGTCCGTGGGGTAGATACGCCGCTGAGATCAGAGATCCCTGGAAGAAAACTAGGGTTTGGCTCGGTACCTTCGATTCCGCCGAAGAAGCCGCGCGTGCTTACGATCATGCCGCTCGGTCTCTCCGTGGAGCCAAGGCCAAAACTAACTTTCCTTTACATCCATCGACGATTTCGATTCAGCAGCAAATTCCGTTTTACCAATCGCCGCCGGATTTCATCGATTCCAACGGTTTTGGCAAGATTGAGTGTGTTCAGGCTAATAGGCCTACTTCGAGCAGCTTGAGTTCCACCGTCGAGTCGTTTAGTGGGCCGCGGATTTCTAACCCTTTGTCGTCGCTGTCGATGGTTCGCCGGAGGCCGGTGCAGCCTGTTTCGCCGGACGACTGCCACAGCGACTGTGATTCCTCCTCCTCTGTTGTTGATGATGATGAGGTCTGTGTACTCGCTTCTTTCCGTAGAGCCTTGCCGTTCGATCTTAACTTACCGCCTCCCATGGACGTCGTGGATTTAACCGGTGATGATCTTCAAGCTACTGCTTTATGCCTCTGA 657 53.42 MRRGRPSDPFTATEVPKSTVQPENPLKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDHAARSLRGAKAKTNFPLHPSTISIQQQIPFYQSPPDFIDSNGFGKIECVQANRPTSSSLSSTVESFSGPRISNPLSSLSMVRRRPVQPVSPDDCHSDCDSSSSVVDDDEVCVLASFRRALPFDLNLPPPMDVVDLTGDDLQATALCL 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41684685 41685341 + Lag0009711.1 Lac9g2224 621150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2224 218 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2224 218 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2224 218 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2224 218 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677(InterPro)
Lac9g2224 218 CDD AP2 30 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2224 218 SMART rav1_2 30 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2224 218 Pfam AP2 domain 30 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2224 218 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g2224 218 MobiDBLite consensus disorder prediction 1 27 - -
Lac9g2224 218 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 181 - -
Lac9g2224 218 FunFam Ethylene-responsive transcription factor 2 30 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3349 Lac-Chr1:53158700 Lac9g2224 Lac-Chr9:41684685 4.40E-26 dispersed
Lac5g1152 Lac-Chr5:19954115 Lac9g2224 Lac-Chr9:41684685 8.40E-53 dispersed
Lac7g1524 Lac-Chr7:16776947 Lac9g2224 Lac-Chr9:41684685 1.80E-19 dispersed
Lac8g1669 Lac-Chr8:34799204 Lac9g2224 Lac-Chr9:41684685 3.00E-19 dispersed
Lac8g2048 Lac-Chr8:38987241 Lac9g2224 Lac-Chr9:41684685 4.30E-20 dispersed
Lac8g2336 Lac-Chr8:41543244 Lac9g2224 Lac-Chr9:41684685 6.10E-27 dispersed
Lac9g0397 Lac-Chr9:7276078 Lac9g2224 Lac-Chr9:41684685 4.50E-19 dispersed
Lac9g2224 Lac-Chr9:41684685 Lac9g2318 Lac-Chr9:42528886 3.90E-18 dispersed
Lac1g3376 Lac-Chr1:53368239 Lac9g2224 Lac-Chr9:41684685 1.40E-15 wgd
Lac10g0904 Lac-Chr10:7208330 Lac9g2224 Lac-Chr9:41684685 5.70E-28 wgd
Lac12g0822 Lac-Chr12:8546830 Lac9g2224 Lac-Chr9:41684685 9.10E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24473 PF00847 AP2 8.90E-14 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2224 K09286 - csv:101221703 392.119