Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2244 ATGCATTTGTTAAATCAGCGAGTTTTTAATCTCTTATTCTCGGACGCCTTGAGATTTTTGAAGACTTGTCAAGATGGAATGAGCAAATCACAAGGGCCTTCATCACTCAAAAGAAAAAGGCCAGATTCATCTCATGGCTCAGGAGGAGCTCTCATAGAGCATGAAAAAGTGCTTTATGACCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGAGACATGAAAAGAGAAACAAAGTATACTGACAATGTGGTAACTAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTAATTAAACTAGTTGAACACTATCAAAACAAAGGGAAGAAATACTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACCGGTGGTAACTGGTACAGCGATGGAAAGCTCGACAGAGAATACATCAATACTCTTAAAGGGTTTTGTGCTAGAATGATACAGAAGATGAAAGTGGCTACAATGGAGGGGATTGTGGACTCTTTCAAAAGGAGTGGAGCATCAAAAGTGGATTTGTCTAGAGAGCAAATAGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTCATGGAGGTGAAGAGCACTGGCTCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGTGCTATGCTAAAGGTATCAAAAGGGAGCCTAAAACAGGGGCTATGGCTTCTACTCCTTGTGGAGTCTGTCCAAGGATTAGTCATTGTACACCAAATGGCATCATTTCGCCTAGGACTTGTGTGTATTACAACAAATGCCTCAAGGGGAGTATCTTCATCTGCTCTCACTCCGTCGCCGCCCAGGTGAAGTTTACAGCCGAGGAGCTCCGTCGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCACGGGAAGTCGACACTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCTGGTGATGTACGGATGACAGACACACGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGCATCTCCCTCTACTATGAGATGTCTGATGAATCATTGAAAAATTACAAGGGAGAGAGACAAGGAAACGAGTATCTTATAAATCTTATTGATTCACCTGGACACGTTGACTTCTCCTCTGAGGTTACAGCTGCTCTGCGTATTACTGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAGACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCCGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTTCAAGTGGATGGAGAAGAGGCTTACCAAACATTCCAGAGGGTCATAGAGAATGCTAATGTGATTATGGCCACGTATGAGGATCCACTTCTTGGAGATGTGCAGGTGTACCCCGAGAAAGGAACAGTCGCTTTCTCTGCCGGTTTGCATGGTTGGGCATTTACCCTGACTAACTTTGCCAAGATGTATGCCTCCAAGTTTGGTGTAGATGAGTCTAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTCGATCCTGCAACCAAGAAGTGGACCAGCAAGAACACGGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCTATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGATAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTGATGAAGTCCGAAGAGAAGGATCTGATGAGCAAAGCATTGATGAAGCGAGTCATGCAAACATGGCTCCCAGCAAGCACTGCTCTCTTGGAAATGATGATCTTTCACCTTCCATCCCCTGCCACGGCACAAAAGTACCGTGTCGAGAATTTGTACGAGGGTCCAATGGATGATGCTTATGCTAGTGCCATTAGAAGCTGTGATCCTGAGGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGTAGGTTCTTTGCCTTTGGTCGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATCATGGGTCCAAACTACGTTCCTGGAGAGAAGAAAGACTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAACAAGAAACAGTGGAGGATGTGCCTTGTGGGAATACTGTTGCCATGGTTGGGCTGGATCAATTTATCACCAAGAATGCCACTCTGACAAACGAGAAGGAAGTTGATGCTCATCCAATTCGAGCCATGAAATTTTCTGTGTCCCCCGTGGTGCGTGTGGCTGTTCAGTGTAAGGTGGCATCTGATCTTCCCAAGCTTGTGGAAGGCCTTAAACGTCTGGCGAAGTCAGACCCTATGGTTGTGTGTACCATAGAGGAATCTGGTGAGCACATTGTTGCTGGTGCTGGAGAACTTCACCTGGAGATCTGTCTGAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCCGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACAGTGATGAGTAAATCCCCCAACAAGCACAATCGTCTGTACATGGAAGCACGGCCCTTGGAGGATGGACTGGCAGAAGCTATTGACGATGGCCGCATTGGACCAAGAGATGATCCCAAAGTCAGGTCTAAAATTTTAGCAGAGGAGTTTGGTTGGGATAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCCGAGACTACTGGCCCGAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGACTCTGTGGTTGCTGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGCTTTGAAGTATGTGATGTGGTCCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCAACTGCTAGGAGGGTAATCTATGCTTCTCAGCTGACCGCCAAACCAAGGCTTCTTGAGCCAGTGTACCTGGTGGAGATTCAGGCTCCCGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGCCATGTCTTCGAGGAGATGCAGAGGCCGGGTACCCCTCTTTACAACATCAAGGCATATCTCCCTGTCATCGAGTCGTTCGGGTTCTCAAGCACATTGAGAGCTGCAACTTCTGGCCAGGCATTCCCACAGTGTGTCTTTGACCATTGGGATCCGATGTCATCCGATCCATTAGAATCTGGTTCCCAGGCTGCGCAGCTAGTTGCAGATATCCGCAAGAGGAAGGGATTGAAGGAGCAAATGACTCCATTGTCCGAGTTTGAGGACAAGCTGTAA 3360 46.34 MHLLNQRVFNLLFSDALRFLKTCQDGMSKSQGPSSLKRKRPDSSHGSGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYTDNVVTKSLKSLQARGLIKLVEHYQNKGKKYYLSKDFEPSKELTGGNWYSDGKLDREYINTLKGFCARMIQKMKVATMEGIVDSFKRSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGIKREPKTGAMASTPCGVCPRISHCTPNGIISPRTCVYYNKCLKGSIFICSHSVAAQVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKNYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASTALLEMMIFHLPSPATAQKYRVENLYEGPMDDAYASAIRSCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGRIGPRDDPKVRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDPMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41810410 41816184 + Lag0009731.1 Lac9g2244 621170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2244 1119 Gene3D Elongation Factor G (Translational Gtpase), domain 3 762 839 - -
Lac9g2244 1119 Pfam Elongation Factor G, domain III 763 825 IPR041095 -
Lac9g2244 1119 SUPERFAMILY Translation proteins 618 752 IPR009000 -
Lac9g2244 1119 Pfam Elongation factor G C-terminus 1000 1087 IPR000640 -
Lac9g2244 1119 Pfam Elongation factor Tu domain 2 670 738 IPR004161 GO:0005525(InterPro)
Lac9g2244 1119 CDD EF2_II 651 746 - -
Lac9g2244 1119 CDD aeEF2_snRNP_like_IV 835 1007 - -
Lac9g2244 1119 FunFam Translation elongation factor 2 762 839 - -
Lac9g2244 1119 Pfam Elongation factor G, domain IV 886 998 IPR005517 GO:0005525(InterPro)
Lac9g2244 1119 NCBIfam small GTP-binding protein domain 296 452 IPR005225 GO:0005525(InterPro)
Lac9g2244 1119 Gene3D - 999 1119 - -
Lac9g2244 1119 CDD eEF2_snRNP_like_C 1003 1081 - -
Lac9g2244 1119 SMART EFG_C_a 1000 1089 IPR000640 -
Lac9g2244 1119 FunFam Translation elongation factor 2 999 1119 - -
Lac9g2244 1119 Pfam Elongation factor Tu GTP binding domain 294 497 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac9g2244 1119 Gene3D - 846 998 IPR014721 -
Lac9g2244 1119 Gene3D - 53 116 IPR036388 -
Lac9g2244 1119 SUPERFAMILY Ribosomal protein S5 domain 2-like 838 1002 IPR020568 -
Lac9g2244 1119 FunFam Translation elongation factor 2 279 513 - -
Lac9g2244 1119 SUPERFAMILY Winged helix DNA-binding domain 53 115 IPR036390 -
Lac9g2244 1119 FunFam Translation elongation factor 2 619 760 - -
Lac9g2244 1119 MobiDBLite consensus disorder prediction 26 49 - -
Lac9g2244 1119 SUPERFAMILY EF-G C-terminal domain-like 760 836 IPR035647 -
Lac9g2244 1119 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 293 529 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac9g2244 1119 SUPERFAMILY EF-G C-terminal domain-like 1003 1114 IPR035647 -
Lac9g2244 1119 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 334 349 IPR031157 -
Lac9g2244 1119 Pfam RNA polymerase Rpc34 subunit 53 153 IPR007832 GO:0005666(InterPro)|GO:0006383(InterPro)
Lac9g2244 1119 Pfam RNA polymerase Rpc34 subunit 154 261 IPR007832 GO:0005666(InterPro)|GO:0006383(InterPro)
Lac9g2244 1119 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 617 IPR027417 -
Lac9g2244 1119 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 279 1118 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Lac9g2244 1119 Gene3D - 279 513 IPR027417 -
Lac9g2244 1119 PRINTS GTP-binding elongation factor signature 341 349 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac9g2244 1119 PRINTS GTP-binding elongation factor signature 429 438 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac9g2244 1119 PRINTS GTP-binding elongation factor signature 377 387 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac9g2244 1119 PRINTS GTP-binding elongation factor signature 393 404 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac9g2244 1119 PRINTS GTP-binding elongation factor signature 297 310 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac9g2244 1119 FunFam Translation elongation factor 2 845 998 - -
Lac9g2244 1119 CDD EF2_snRNP_III 763 835 - -
Lac9g2244 1119 CDD EF2 296 506 - -
Lac9g2244 1119 Gene3D Translation factors 619 760 - -
Lac9g2244 1119 SMART EFG_IV_2 882 998 IPR005517 GO:0005525(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1069 Lac-Chr12:13158103 Lac9g2244 Lac-Chr9:41810410 2.20E-31 dispersed
Lac3g1219 Lac-Chr3:10374503 Lac9g2244 Lac-Chr9:41810410 4.40E-119 dispersed
Lac6g2865 Lac-Chr6:46267773 Lac9g2244 Lac-Chr9:41810410 1.50E-105 dispersed
Lac7g0474 Lac-Chr7:3781689 Lac9g2244 Lac-Chr9:41810410 3.60E-102 dispersed
Lac8g2669 Lac-Chr8:44178707 Lac9g2244 Lac-Chr9:41810410 6.70E-22 dispersed
Lac9g2244 Lac-Chr9:41810410 Lac9g2266 Lac-Chr9:41996315 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2244 K03234 - csv:101209544 1650.57