Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2245 | ATGGATGCTAACGCACGAGGTCGTTTCACACTCGGAAAACAGTCCTCGCTCAAGCCGGAACGGGAAGGTTCGGCGGTGATTAACGACGAGCTCGATGATCTGATCATGATTGATCCTGGGATTAAGCTGATGTACCTGGCGAATGATGGCGACTCGGATGGGATTAGGGAGCTACTGGATTCGGGTACCGACGTGAATTTTCAGGATACTGACGGACGAACCTCTTTGCATGTTGCTGCCTGTCAGGGCAGGCTGGACGTTGTTGAGTTGCTACTCGAAAGGGGAGCGCAGGTCGACGTTCAGGACCGATGGGGCAGCACGCCTCTTGCAGATGCCATATATTACAAGAATCATGACGTGATCAAACTCTTAGAGAGACATGGTGCAAAGCTACCGATGGCTCCAATGCATGTGCAAAATGCTCGTGAAGTTCCGGAGTATGAGATCAATCCAAATGAGCTTGATTTTTCTGATAGTGTGAACATTACAAAAGGAACTTTCCGCAGTGCGTTGTGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACTGATGAGGATAAAGTGAAGGCATTTAGGGATGAACTTTCTTTACTTCAGAAGATCCGACATCCTAATGTTGTCCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACGGAGTATTTGCCCGAGGGGGACCTTCATGCATTCTTGAACCGTAAAGGTTCCTTGAAGCTAGCAACTGTTGTAAAGTTTGCTCTTGACATTGCTAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTTGCAGACTTTGGAGTGAGCAAACTTCTAAATAAGGTCAAAGAAGACAGACCTGTGGCTGTGACAAGTCATGATTCTTCATGGCAATATGTGGCACCTGAGGTTTATAAAAATGAAGAATATGATACGAGAGTGGATGTATTTTCATTTGCTTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAAAGCCAGAAAATGAAGTACCTAAAGCTTATATAGCTGGTGAACGCCCACCATTTACGGCTCCACCTAAGCGTTATGCACTTGGAGTAAAGGAGCTAATCGAGGAATGTTGGGATGAGAAGCCACATAAAAGACCCACATTCCGGCAAATAATAAGAAGGTTGGAGGATATTAACAACCGACTTTTGCAAGCAAGGAGCTTGAAGGTGAATCCATTCTGCAATTGTTTTGCGACACTGAAAGCCTTTTTTAAACGTGAAAGGACTAATCCAGGCAGCAGATCTTACTCGGAAAGCAAATGA | 1374 | 44.91 | MDANARGRFTLGKQSSLKPEREGSAVINDELDDLIMIDPGIKLMYLANDGDSDGIRELLDSGTDVNFQDTDGRTSLHVAACQGRLDVVELLLERGAQVDVQDRWGSTPLADAIYYKNHDVIKLLERHGAKLPMAPMHVQNAREVPEYEINPNELDFSDSVNITKGTFRSALWRGIQVAVKTLGEEVFTDEDKVKAFRDELSLLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPEGDLHAFLNRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLNKVKEDRPVAVTSHDSSWQYVAPEVYKNEEYDTRVDVFSFALILQEMIEGNPPFPTKPENEVPKAYIAGERPPFTAPPKRYALGVKELIEECWDEKPHKRPTFRQIIRRLEDINNRLLQARSLKVNPFCNCFATLKAFFKRERTNPGSRSYSESK | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 41820390 | 41830012 | + | Lag0009732.1 | Lac9g2245 | 621171 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2245 | 457 | ProSiteProfiles | Ankyrin repeat region circular profile. | 71 | 103 | - | - | |
Lac9g2245 | 457 | Gene3D | - | 35 | 144 | IPR036770 | - | |
Lac9g2245 | 457 | ProSiteProfiles | Protein kinase domain profile. | 156 | 420 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac9g2245 | 457 | SMART | ANK_2a | 104 | 133 | IPR002110 | GO:0005515(InterPro) | |
Lac9g2245 | 457 | SMART | ANK_2a | 71 | 100 | IPR002110 | GO:0005515(InterPro) | |
Lac9g2245 | 457 | SMART | ANK_2a | 39 | 67 | IPR002110 | GO:0005515(InterPro) | |
Lac9g2245 | 457 | CDD | STKc_MAP3K-like | 162 | 412 | - | - | |
Lac9g2245 | 457 | SUPERFAMILY | Protein kinase-like (PK-like) | 165 | 413 | IPR011009 | - | |
Lac9g2245 | 457 | ProSiteProfiles | Ankyrin repeat profile. | 71 | 103 | IPR002110 | GO:0005515(InterPro) | |
Lac9g2245 | 457 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lac9g2245 | 457 | Pfam | Protein tyrosine and serine/threonine kinase | 162 | 412 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac9g2245 | 457 | FunFam | Os01g0748600 protein | 142 | 433 | - | - | |
Lac9g2245 | 457 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 60 | 413 | IPR051681 | GO:0004674(PANTHER) | |
Lac9g2245 | 457 | Gene3D | Transferase(Phosphotransferase) domain 1 | 232 | 432 | - | - | |
Lac9g2245 | 457 | Pfam | Ankyrin repeats (3 copies) | 43 | 130 | IPR002110 | GO:0005515(InterPro) | |
Lac9g2245 | 457 | FunFam | serine/threonine-protein kinase STY46-like | 149 | 232 | - | - | |
Lac9g2245 | 457 | FunFam | Integrin-linked protein kinase family | 23 | 147 | - | - | |
Lac9g2245 | 457 | Gene3D | Phosphorylase Kinase; domain 1 | 148 | 231 | - | - | |
Lac9g2245 | 457 | SUPERFAMILY | Ankyrin repeat | 42 | 134 | IPR036770 | - | |
Lac9g2245 | 457 | PIRSF | ILK | 2 | 435 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0994 | Lac-Chr10:7987654 | Lac9g2245 | Lac-Chr9:41820390 | 4.60E-138 | dispersed | |
Lac1g3451 | Lac-Chr1:53873252 | Lac9g2245 | Lac-Chr9:41820390 | 2.20E-140 | dispersed | |
Lac8g0305 | Lac-Chr8:3607110 | Lac9g2245 | Lac-Chr9:41820390 | 4.20E-36 | dispersed | |
Lac9g2194 | Lac-Chr9:41399966 | Lac9g2245 | Lac-Chr9:41820390 | 2.10E-32 | dispersed | |
Lac9g2245 | Lac-Chr9:41820390 | Lac10g0442 | Lac-Chr10:3462646 | 3.40E-32 | dispersed | |
Lac12g0300 | Lac-Chr12:3371442 | Lac9g2245 | Lac-Chr9:41820390 | 3.00E-85 | transposed | |
Lac13g0345 | Lac-Chr13:2467957 | Lac9g2245 | Lac-Chr9:41820390 | 4.00E-70 | transposed | |
Lac10g0885 | Lac-Chr10:7097697 | Lac9g2245 | Lac-Chr9:41820390 | 9.40E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86448 | PF07714 | PK_Tyr_Ser-Thr | 6.90E-58 | CL0016 | Lac | PK |
Pathway information
