Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2245 ATGGATGCTAACGCACGAGGTCGTTTCACACTCGGAAAACAGTCCTCGCTCAAGCCGGAACGGGAAGGTTCGGCGGTGATTAACGACGAGCTCGATGATCTGATCATGATTGATCCTGGGATTAAGCTGATGTACCTGGCGAATGATGGCGACTCGGATGGGATTAGGGAGCTACTGGATTCGGGTACCGACGTGAATTTTCAGGATACTGACGGACGAACCTCTTTGCATGTTGCTGCCTGTCAGGGCAGGCTGGACGTTGTTGAGTTGCTACTCGAAAGGGGAGCGCAGGTCGACGTTCAGGACCGATGGGGCAGCACGCCTCTTGCAGATGCCATATATTACAAGAATCATGACGTGATCAAACTCTTAGAGAGACATGGTGCAAAGCTACCGATGGCTCCAATGCATGTGCAAAATGCTCGTGAAGTTCCGGAGTATGAGATCAATCCAAATGAGCTTGATTTTTCTGATAGTGTGAACATTACAAAAGGAACTTTCCGCAGTGCGTTGTGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACTGATGAGGATAAAGTGAAGGCATTTAGGGATGAACTTTCTTTACTTCAGAAGATCCGACATCCTAATGTTGTCCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACGGAGTATTTGCCCGAGGGGGACCTTCATGCATTCTTGAACCGTAAAGGTTCCTTGAAGCTAGCAACTGTTGTAAAGTTTGCTCTTGACATTGCTAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGCGATCTTGAACCTTCAAACATACTGCGGGATGATTCTGGGCACCTGAAAGTTGCAGACTTTGGAGTGAGCAAACTTCTAAATAAGGTCAAAGAAGACAGACCTGTGGCTGTGACAAGTCATGATTCTTCATGGCAATATGTGGCACCTGAGGTTTATAAAAATGAAGAATATGATACGAGAGTGGATGTATTTTCATTTGCTTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAAAGCCAGAAAATGAAGTACCTAAAGCTTATATAGCTGGTGAACGCCCACCATTTACGGCTCCACCTAAGCGTTATGCACTTGGAGTAAAGGAGCTAATCGAGGAATGTTGGGATGAGAAGCCACATAAAAGACCCACATTCCGGCAAATAATAAGAAGGTTGGAGGATATTAACAACCGACTTTTGCAAGCAAGGAGCTTGAAGGTGAATCCATTCTGCAATTGTTTTGCGACACTGAAAGCCTTTTTTAAACGTGAAAGGACTAATCCAGGCAGCAGATCTTACTCGGAAAGCAAATGA 1374 44.91 MDANARGRFTLGKQSSLKPEREGSAVINDELDDLIMIDPGIKLMYLANDGDSDGIRELLDSGTDVNFQDTDGRTSLHVAACQGRLDVVELLLERGAQVDVQDRWGSTPLADAIYYKNHDVIKLLERHGAKLPMAPMHVQNAREVPEYEINPNELDFSDSVNITKGTFRSALWRGIQVAVKTLGEEVFTDEDKVKAFRDELSLLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPEGDLHAFLNRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLNKVKEDRPVAVTSHDSSWQYVAPEVYKNEEYDTRVDVFSFALILQEMIEGNPPFPTKPENEVPKAYIAGERPPFTAPPKRYALGVKELIEECWDEKPHKRPTFRQIIRRLEDINNRLLQARSLKVNPFCNCFATLKAFFKRERTNPGSRSYSESK 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41820390 41830012 + Lag0009732.1 Lac9g2245 621171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2245 457 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Lac9g2245 457 Gene3D - 35 144 IPR036770 -
Lac9g2245 457 ProSiteProfiles Protein kinase domain profile. 156 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2245 457 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
Lac9g2245 457 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
Lac9g2245 457 SMART ANK_2a 39 67 IPR002110 GO:0005515(InterPro)
Lac9g2245 457 CDD STKc_MAP3K-like 162 412 - -
Lac9g2245 457 SUPERFAMILY Protein kinase-like (PK-like) 165 413 IPR011009 -
Lac9g2245 457 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
Lac9g2245 457 MobiDBLite consensus disorder prediction 1 23 - -
Lac9g2245 457 Pfam Protein tyrosine and serine/threonine kinase 162 412 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g2245 457 FunFam Os01g0748600 protein 142 433 - -
Lac9g2245 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 60 413 IPR051681 GO:0004674(PANTHER)
Lac9g2245 457 Gene3D Transferase(Phosphotransferase) domain 1 232 432 - -
Lac9g2245 457 Pfam Ankyrin repeats (3 copies) 43 130 IPR002110 GO:0005515(InterPro)
Lac9g2245 457 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Lac9g2245 457 FunFam Integrin-linked protein kinase family 23 147 - -
Lac9g2245 457 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Lac9g2245 457 SUPERFAMILY Ankyrin repeat 42 134 IPR036770 -
Lac9g2245 457 PIRSF ILK 2 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0994 Lac-Chr10:7987654 Lac9g2245 Lac-Chr9:41820390 4.60E-138 dispersed
Lac1g3451 Lac-Chr1:53873252 Lac9g2245 Lac-Chr9:41820390 2.20E-140 dispersed
Lac8g0305 Lac-Chr8:3607110 Lac9g2245 Lac-Chr9:41820390 4.20E-36 dispersed
Lac9g2194 Lac-Chr9:41399966 Lac9g2245 Lac-Chr9:41820390 2.10E-32 dispersed
Lac9g2245 Lac-Chr9:41820390 Lac10g0442 Lac-Chr10:3462646 3.40E-32 dispersed
Lac12g0300 Lac-Chr12:3371442 Lac9g2245 Lac-Chr9:41820390 3.00E-85 transposed
Lac13g0345 Lac-Chr13:2467957 Lac9g2245 Lac-Chr9:41820390 4.00E-70 transposed
Lac10g0885 Lac-Chr10:7097697 Lac9g2245 Lac-Chr9:41820390 9.40E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86448 PF07714 PK_Tyr_Ser-Thr 6.90E-58 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2245 - - - 0.0