Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2256 ATGTCAAATGAAGATCATCAGAAGGATTCTTGTTACCAAATATTTGATCCTTTCACTCACAATTTCCATCATCACAAACCCTTTGAAGCTCCTCTTTTAAGTCCCTATGATGCCTTTGATCCCTCTTATGTGGGGTTCTTCTCTGATTTCTTACATGCCTCAGCTGATTATGACTACAACAACATCCTCTCCACTGGCCTCGAGATGTCGTGCTCGTCGTCCGAAGTTATTTCTCCAATCGACGATGCTTCGAAGAAGTCTATGGGCGTCGGAGAGTCCGTGGTGACCGGTGAGCACCCGTCGACGCCGATTTCCTCGACGGCGTCTTCGTCCGATGAGGCTGCGCCGGGTGGTGGTGATTCTGCCAAGAGTGGGGAAGAAGTGAAAGAGTTTGAAGATAAAAGTGGAGAAAATTGCAAGAAAGGGAATGGACGAAAAATAAAGAAAGAGAAACGAGAGAAAGGGCCACGATTTGCGTTCTTGACCAAGACTGAAATTGATCATCTTGAAGATGGATATAGGTGGAGAAAATATGGTCAGAAAGCAGTCAAAAACAGCCCTTTTCCAAGAAGTTATTACAAATGCACAACTCAAAATTGCAGTGTGAAAAAACGAATAGAAAGATCAACCGAAGATCCATGTTTTGTTGTGACAACGTACGAAGGGAAACACAACCACCATTGTCCAATTACACTTCGAGGGCAGAATGCCGCCGGAGTGTTGCCGGCGTCGGCTTCACCGCCGTTGCTTCCCGGATTAGCTCCGGCGAACTTCTTCTCCGACGAGGTGTATGAAGGGGTTGATCTGCAGCAACAATATTATCAGGTTCCAGATTATGGGCTGTTGCAAGATTTGATTAATCCATTATCATTCAATCGAAAGCAAGAGCCATGA 894 45.41 MSNEDHQKDSCYQIFDPFTHNFHHHKPFEAPLLSPYDAFDPSYVGFFSDFLHASADYDYNNILSTGLEMSCSSSEVISPIDDASKKSMGVGESVVTGEHPSTPISSTASSSDEAAPGGGDSAKSGEEVKEFEDKSGENCKKGNGRKIKKEKREKGPRFAFLTKTEIDHLEDGYRWRKYGQKAVKNSPFPRSYYKCTTQNCSVKKRIERSTEDPCFVVTTYEGKHNHHCPITLRGQNAAGVLPASASPPLLPGLAPANFFSDEVYEGVDLQQQYYQVPDYGLLQDLINPLSFNRKQEP 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41926862 41928864 + Lag0009743.1 Lac9g2256 621182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2256 297 Gene3D WRKY domain 155 230 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2256 297 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 90 235 IPR044810 GO:0003700(InterPro)
Lac9g2256 297 Pfam WRKY DNA -binding domain 170 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2256 297 SUPERFAMILY WRKY DNA-binding domain 162 229 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2256 297 MobiDBLite consensus disorder prediction 98 114 - -
Lac9g2256 297 SMART WRKY_cls 169 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2256 297 MobiDBLite consensus disorder prediction 82 151 - -
Lac9g2256 297 FunFam WRKY transcription factor 57 155 229 - -
Lac9g2256 297 ProSiteProfiles WRKY domain profile. 164 229 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g2256 297 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2221 Lac-Chr5:40848784 Lac9g2256 Lac-Chr9:41926862 7.20E-14 dispersed
Lac6g0169 Lac-Chr6:1373820 Lac9g2256 Lac-Chr9:41926862 9.10E-25 dispersed
Lac7g0975 Lac-Chr7:8283134 Lac9g2256 Lac-Chr9:41926862 4.10E-32 dispersed
Lac7g1265 Lac-Chr7:11984076 Lac9g2256 Lac-Chr9:41926862 4.30E-25 dispersed
Lac9g0429 Lac-Chr9:8038047 Lac9g2256 Lac-Chr9:41926862 4.60E-24 dispersed
Lac9g0458 Lac-Chr9:8822762 Lac9g2256 Lac-Chr9:41926862 1.50E-24 dispersed
Lac9g1136 Lac-Chr9:26643106 Lac9g2256 Lac-Chr9:41926862 1.30E-19 dispersed
Lac9g1320 Lac-Chr9:30464887 Lac9g2256 Lac-Chr9:41926862 4.90E-16 dispersed
Lac9g2256 Lac-Chr9:41926862 Lac9g2348 Lac-Chr9:42749885 5.20E-21 dispersed
Lac1g3492 Lac-Chr1:54217786 Lac9g2256 Lac-Chr9:41926862 4.80E-42 transposed
Lac12g0876 Lac-Chr12:9081101 Lac9g2256 Lac-Chr9:41926862 1.30E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24476 PF03106 WRKY 9.00E-25 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2256 - - - 0.0