Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2257 ATGGATAATTTGCTCCTCACCCGATTGCATCGAAAACCTCGAAGCATCAGACCCATTCTTCATGGATCAGGCCATCACAAAGGAAGAAAGAGAAGGAAAACCGTGGGCCAACCCACGGACCTCCAAACCGAGGTCGAGGCCAACCGGGGCACATACCTAGGGCCAGCCAGTTGTCGAGTTAATGCCATTAACGACCAAGATCATTCCAATGCCCTTATCTTAACGGTGTTAGAAGGCTGCCCCAGTTGGCTTTTTGGCCAAAACCCGACTCGACCCGACTCAAAAGGCTCCGGATTTGGAGTTTTGGGACTTGGGATTGAATGGGATTGGGAGTTCAACATTTGGCATTTTGGCATATCCCCCATGCTTTTTGGGTCTCCATTGGCTAAGCACGATTCGCTTTATTTCCCTTTCTGGGTTCCTGGAGGAAGGGGCAAATCTGGGTCTATCTTCGATTACTACATGAGGTCCTTGGTCCTTATCTCATACCTGAATTTCCAGATGGTGTTCAGTGGATCAGACATGGCGTCTGGGAATTCATTGAATGATCATTTATCCAAGAAGACTTCATTTTGGGGCTTGTCATTGTGGGTTTTGATCTGCATATGCATTGGTGCATTTATAGTTTTGATTCTTGGTTTATTGTCTATGTGGATTCTGTTTCGAAAAAAATCTAAAAGATCCATGGATAAATTCCCTATTTCCCAAATACCTAATTTTTCAAAAGATATCAGGATAGACCAGGTTGGGGCTCAAACTCCCAATGACCACCCTGAAAATAGGCTTCTTTCGGTTGATGTCAAAAGAAATGATGAAAACTCTGAAGTTATGGCTGTGACAAAATCGAGTGAACCCGATAACAATAGCCAATGCAGTTCCACTTATCAACACGAAAAAGCAGGCAATTCACAATCAGGAGAAGAAGGAAGCTCTGGAAATGCTAGGAAGCAGGCTTCGAGAACTTATGGAGGATACGGAGGAATTGTTCCACCGTCTCCTCTTGTTGGTTTGCCAGAAATTTCACATCTTGGATGGGGCCACTGGTTCACTCTCAGGGATCTAGAGCTTGCAACTAATCGTTTTTCTACTGAAAATATTCTTGGAGAGGGGGGATATGGGGTTGTATATAAAGGCAGACTCATCAATGGCACTGAGGTTGCAGTGAAAAAACTTCTCAATAATTTGGGTCAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTTCGGCATAAGAATCTTGTCCGACTGCTGGGGTATTGCATAGAAGGAGTTCATAGGATGCTAGTATATGAATATGTGAACAATGGCAATCTAGAACAGTGGCTGCATGGAGCCATGTGCCAACACGGCACGCTTACTTGGGAGGCTCGCATGAAGGTGCTTCTTGGCACCGCTAAGGCGCTTGCGTATTTACATGAAGCAATTGAACCAAAAGTTGTTCACAGAGATATAAAATCAAGCAACATTTTGATTGATGATGAGTTCAATGCCAAAGTTTCTGATTTCGGATTGGCCAAACTCTTGGGCTCTGGAGAGAGTCACATCACAACTAGAGTCATGGGAACATTTGGGTATGTGGCACCAGAATATGCAAATACGGGCTTGTTGAATGAAAAGAGTGACATTTATAGCTTCGGCGTTCTCCTGCTAGAAGCAATTACAGGGAGGGACCCTGTGGATTATGCCCGTCCTTCTAATGAGGTTAATCTTGTTGAATGGCTAAAGATGATGGTAGCAACAAGGAGAGCAGAGGAAGTTGTGGACATGAACCTTGAGGTTAAGCCTACTACTCGCGCTTTGAAACGTGCCCTTCTTGTTGCACTTAGGTGTATTGATCCTGAATCAATCAAGAGACCCAAGATGAGTCAAGTTGTAAGAATGCTCGAAGCCGACGAATTTCCACTGCACGAGGATAGAAGAAACCGAAAAAGCCGATCGATAAGCTTGGAGATCGAGTCGATGAAAGAAATATCAGGTTCAGAGCAGACGGGTGGGCCGTCAGAGAGCCATAAATCAGAGACAAGCCATGGATAG 2046 44.67 MDNLLLTRLHRKPRSIRPILHGSGHHKGRKRRKTVGQPTDLQTEVEANRGTYLGPASCRVNAINDQDHSNALILTVLEGCPSWLFGQNPTRPDSKGSGFGVLGLGIEWDWEFNIWHFGISPMLFGSPLAKHDSLYFPFWVPGGRGKSGSIFDYYMRSLVLISYLNFQMVFSGSDMASGNSLNDHLSKKTSFWGLSLWVLICICIGAFIVLILGLLSMWILFRKKSKRSMDKFPISQIPNFSKDIRIDQVGAQTPNDHPENRLLSVDVKRNDENSEVMAVTKSSEPDNNSQCSSTYQHEKAGNSQSGEEGSSGNARKQASRTYGGYGGIVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSTENILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMCQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDMNLEVKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLEADEFPLHEDRRNRKSRSISLEIESMKEISGSEQTGGPSESHKSETSHG 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41932067 41938549 - Lag0009744.1 Lac9g2257 621183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2257 681 Gene3D Transferase(Phosphotransferase) domain 1 437 650 - -
Lac9g2257 681 MobiDBLite consensus disorder prediction 640 654 - -
Lac9g2257 681 Coils Coil 381 401 - -
Lac9g2257 681 FunFam Putative receptor-like protein kinase 343 436 - -
Lac9g2257 681 MobiDBLite consensus disorder prediction 276 318 - -
Lac9g2257 681 MobiDBLite consensus disorder prediction 276 323 - -
Lac9g2257 681 MobiDBLite consensus disorder prediction 655 674 - -
Lac9g2257 681 FunFam Putative receptor-like serine/threonine-protein kinase 437 647 - -
Lac9g2257 681 Gene3D Phosphorylase Kinase; domain 1 343 436 - -
Lac9g2257 681 PANTHER OS01G0323000 PROTEIN 180 657 IPR052232 -
Lac9g2257 681 ProSitePatterns Protein kinases ATP-binding region signature. 367 390 IPR017441 GO:0005524(InterPro)
Lac9g2257 681 Pfam Protein kinase domain 362 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2257 681 ProSiteProfiles Protein kinase domain profile. 361 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2257 681 SMART serkin_6 361 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g2257 681 MobiDBLite consensus disorder prediction 16 38 - -
Lac9g2257 681 MobiDBLite consensus disorder prediction 16 33 - -
Lac9g2257 681 SUPERFAMILY Protein kinase-like (PK-like) 345 637 IPR011009 -
Lac9g2257 681 CDD STKc_IRAK 367 633 - -
Lac9g2257 681 MobiDBLite consensus disorder prediction 640 681 - -
Lac9g2257 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1043 Lac-Chr11:11828326 Lac9g2257 Lac-Chr9:41932067 1.10E-158 dispersed
Lac6g2506 Lac-Chr6:42865381 Lac9g2257 Lac-Chr9:41932067 1.20E-154 dispersed
Lac7g0210 Lac-Chr7:1667519 Lac9g2257 Lac-Chr9:41932067 3.70E-135 dispersed
Lac8g1665 Lac-Chr8:34759725 Lac9g2257 Lac-Chr9:41932067 1.60E-62 dispersed
Lac9g1665 Lac-Chr9:36012322 Lac9g2257 Lac-Chr9:41932067 1.60E-75 dispersed
Lac9g2257 Lac-Chr9:41932067 Lac2g0081 Lac-Chr2:571877 1.70E-67 dispersed
Lac6g0024 Lac-Chr6:243839 Lac9g2257 Lac-Chr9:41932067 2.30E-17 transposed
Lac10g0875 Lac-Chr10:7011693 Lac9g2257 Lac-Chr9:41932067 1.70E-55 wgd
Lac12g0877 Lac-Chr12:9089906 Lac9g2257 Lac-Chr9:41932067 5.60E-225 wgd
Lac8g2666 Lac-Chr8:44158979 Lac9g2257 Lac-Chr9:41932067 1.30E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86450 PF00069 Pkinase 3.40E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2257 - - - 0.0