Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2258 ATGGCAGCTTCATCGATGGCTCTGTCTTCCCCATCTCTGGCCGGCCAAGCCGTGAGACTGTCCCCCGCCGCCTCCGACCTCCTCGGCGACGGCCGTGTCACCATGAGGAAAACCGCCGGCAAGCCCAAGCCCGTCTCCTCCGGAAGCCCATGGTACGGCCCAGATCGCGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCCCCGTCCTATCTGACCGGCGAGTTCCCCGGCGACTACGGTTGGGACACCGCCGGCCTCTCCGCCGACCCCGAGACCTTCGCCAAGAACCGCGAGCTCGAAGTGATCCACTCGAGATGGGCCATGCTCGGGGCTCTCGGCTGCGTGTTCCCGGAGCTCCTCTCTCGCAACGGCGTGAAATTCGGCGAGGCCGTGTGGTTCAAAGCCGGGTCGCAGATCTTCAGCGAAGGTGGGCTGGACTATTTGGGCAACCCGAGCCTGGTCCACGCTCAGAGCATTTTGGCCATTTGGGCTTGCCAAGTTGTGCTGATGGGCGCCGTCGAGGGCTACAGAATTGCCGGTGGACCGCTCGGCGAAATCACCGACCCGATCTACCCAGGTGGGAGCTTCGACCCATTGGGGCTGGCCGATGACCCAGAGGCCTTCGCCGAGCTTAAAGTGAAGGAGCTCAAAAATGGGCGATTGGCGATGTTCTCCATGTTCGGATTCTTTGTTCAGGCCATTGTTACTGGCAAAGGGCCTTTGGAGAATTTGGCTGACCATTTGGCCGACCCTGTCAACAACAATGCTTGGGCTTATGCCACTAACTTCGTACCTGGAAAGTGA 804 60.95 MAASSMALSSPSLAGQAVRLSPAASDLLGDGRVTMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41942147 41942950 - Lag0009745.1 Lac9g2258 621184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2258 267 FunFam Chlorophyll a-b binding protein, chloroplastic 58 260 - -
Lac9g2258 267 Pfam Chlorophyll A-B binding protein 67 234 IPR022796 -
Lac9g2258 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
Lac9g2258 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lac9g2258 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0377 Lac-Chr12:4349059 Lac9g2258 Lac-Chr9:41942147 2.30E-121 dispersed
Lac1g3495 Lac-Chr1:54257968 Lac9g2258 Lac-Chr9:41942147 1.60E-146 dispersed
Lac2g0020 Lac-Chr2:209409 Lac9g2258 Lac-Chr9:41942147 6.30E-52 dispersed
Lac2g2682 Lac-Chr2:41283517 Lac9g2258 Lac-Chr9:41942147 6.50E-57 dispersed
Lac8g2422 Lac-Chr8:42322227 Lac9g2258 Lac-Chr9:41942147 4.60E-31 dispersed
Lac9g2258 Lac-Chr9:41942147 Lac5g1661 Lac-Chr5:33724674 2.20E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2258 K08912 - csv:101213845 539.265