Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g2296 | ATGGCTGTAAGAGCAATCGCAAAGGCTCGTTCAGTGGTGCGAGTGCGATCGACCAGACATCCTCTTCTATCTCCACCTTCTGATGTGCTTGCGGTGCAGAAACCTCACTCCCCCACTCTTCTCATTCGTTCGATGAGCTCGGAGGCGCAGAGCAAAGCCGCTCGTCTTCACGGTTCTGGATTGTTGCGAAGCAAAGGCCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTGAGGTTCGAAATCCAGCCAATGGTGAAGTTATAACCGATGTCCCGCTCATGGGTCAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGTAAATGGTATGAGCTCCTAGTGGCCCACAAAGACGAGATTGCACAACTGATAACCTTAGAGCAAGGCAAACCGTTGAAGGAAGCCGTGGGTGAGATCAACTATGGAGCCAGCTTTATTGAGTTCTTTTCTGAGGAGGCCAAACGAGTATATGGTGACATAATCTCACCAACTATAGCCGATCGTCGACTTTTTGTCTTGAAGCAGGTTGGACCTGCTCTTGCAAGTGGTTGTACGGTGGTCATAAAACCCTCTGAACTTACTCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCGCCGGGTGTAGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCAGGGACTGTTAAAAGGGTGTCCTTAGAACTTGGTGGTAATGCACCTTGCATAATCTTTGATGACGCTGATGTGGATGTTGCAGTAAAAGGAGCTATTGCAGCAAAGTTTCGAAATACTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGCATATACGAGAAATTTGCAAATGCTTTCTCGAAAGCTGTACAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGTTCAGGGCCCTTTAATTAATGAAGCTGCTGTGCAGAAGGTTGAGAAATTTCTTGAAGATGCCATCACAAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACTTTTTTTGAGCCTACAGTTATTACTGATGTGAAGAGTGACATGCTTTTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCCTTACTGCCATTCAGAACAGAGGATGAAGCAATTGCTCTCGCTAATGGCACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCCCTTGAATATGGACTGGTCGGTATTAACGAAGGCATAATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCGGGCCTCGGTCGGGAAGGGTCGAAATATGGCATGGACGAATATCTTGAGGTCTCTTGGCGAGCTTTCTGCACCACGCTCGAAGAAAATGGATTCTCGAGTCTCTTGCTTAAGCTTGTCCCTAATCCCGGCCCCAACCTTGACCCCGAGCTAGTTTCTTAA | 1629 | 46.59 | MAVRAIAKARSVVRVRSTRHPLLSPPSDVLAVQKPHSPTLLIRSMSSEAQSKAARLHGSGLLRSKGLIGGKWIDAYDGKTIEVRNPANGEVITDVPLMGQRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLVAHKDEIAQLITLEQGKPLKEAVGEINYGASFIEFFSEEAKRVYGDIISPTIADRRLFVLKQVGPALASGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIIFDDADVDVAVKGAIAAKFRNTGQTCVCANRILVQEGIYEKFANAFSKAVQNLQVGDGFGEGVVQGPLINEAAVQKVEKFLEDAITKGAKVLLGGKRHSLGMTFFEPTVITDVKSDMLLSREEVFGPVAPLLPFRTEDEAIALANGTNAGLAAYIFTNNIQRSWRVTEALEYGLVGINEGIISTEVAPFGGVKQSGLGREGSKYGMDEYLEVSWRAFCTTLEENGFSSLLLKLVPNPGPNLDPELVS | 542 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 42287797 | 42302261 | + | Lag0009783.1 | Lac9g2296 | 621222 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g2296 | 542 | FunFam | Aldehyde dehydrogenase, putative | 482 | 507 | - | - | |
Lac9g2296 | 542 | FunFam | Succinate-semialdehyde dehydrogenase, mitochondrial | 52 | 200 | - | - | |
Lac9g2296 | 542 | Pfam | Aldehyde dehydrogenase family | 195 | 509 | IPR015590 | GO:0016491(InterPro) | |
Lac9g2296 | 542 | Pfam | Aldehyde dehydrogenase family | 72 | 194 | IPR015590 | GO:0016491(InterPro) | |
Lac9g2296 | 542 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 286 | 293 | IPR029510 | GO:0016491(InterPro) | |
Lac9g2296 | 542 | SUPERFAMILY | ALDH-like | 63 | 509 | IPR016161 | GO:0016491(InterPro) | |
Lac9g2296 | 542 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 293 | 515 | IPR016163 | GO:0016620(InterPro) | |
Lac9g2296 | 542 | FunFam | Succinate-semialdehyde dehydrogenase I | 290 | 479 | - | - | |
Lac9g2296 | 542 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 314 | 325 | IPR016160 | GO:0016491(InterPro) | |
Lac9g2296 | 542 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 56 | 195 | IPR016162 | GO:0016491(InterPro) | |
Lac9g2296 | 542 | CDD | ALDH_F5_SSADH_GabD | 83 | 507 | - | - | |
Lac9g2296 | 542 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 196 | 292 | IPR016162 | GO:0016491(InterPro) | |
Lac9g2296 | 542 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 58 | 508 | IPR050740 | GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac6g1384 | Lac-Chr6:14939258 | Lac9g2296 | Lac-Chr9:42287797 | 5.70E-79 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g2296 | K17761 | - | csv:101217352 | 839.336 |