Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g2296 ATGGCTGTAAGAGCAATCGCAAAGGCTCGTTCAGTGGTGCGAGTGCGATCGACCAGACATCCTCTTCTATCTCCACCTTCTGATGTGCTTGCGGTGCAGAAACCTCACTCCCCCACTCTTCTCATTCGTTCGATGAGCTCGGAGGCGCAGAGCAAAGCCGCTCGTCTTCACGGTTCTGGATTGTTGCGAAGCAAAGGCCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTGAGGTTCGAAATCCAGCCAATGGTGAAGTTATAACCGATGTCCCGCTCATGGGTCAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGTAAATGGTATGAGCTCCTAGTGGCCCACAAAGACGAGATTGCACAACTGATAACCTTAGAGCAAGGCAAACCGTTGAAGGAAGCCGTGGGTGAGATCAACTATGGAGCCAGCTTTATTGAGTTCTTTTCTGAGGAGGCCAAACGAGTATATGGTGACATAATCTCACCAACTATAGCCGATCGTCGACTTTTTGTCTTGAAGCAGGTTGGACCTGCTCTTGCAAGTGGTTGTACGGTGGTCATAAAACCCTCTGAACTTACTCCCTTGACAGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCGCCGGGTGTAGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCAGGGACTGTTAAAAGGGTGTCCTTAGAACTTGGTGGTAATGCACCTTGCATAATCTTTGATGACGCTGATGTGGATGTTGCAGTAAAAGGAGCTATTGCAGCAAAGTTTCGAAATACTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGCATATACGAGAAATTTGCAAATGCTTTCTCGAAAGCTGTACAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGTTCAGGGCCCTTTAATTAATGAAGCTGCTGTGCAGAAGGTTGAGAAATTTCTTGAAGATGCCATCACAAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACTTTTTTTGAGCCTACAGTTATTACTGATGTGAAGAGTGACATGCTTTTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCCTTACTGCCATTCAGAACAGAGGATGAAGCAATTGCTCTCGCTAATGGCACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCCCTTGAATATGGACTGGTCGGTATTAACGAAGGCATAATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCGGGCCTCGGTCGGGAAGGGTCGAAATATGGCATGGACGAATATCTTGAGGTCTCTTGGCGAGCTTTCTGCACCACGCTCGAAGAAAATGGATTCTCGAGTCTCTTGCTTAAGCTTGTCCCTAATCCCGGCCCCAACCTTGACCCCGAGCTAGTTTCTTAA 1629 46.59 MAVRAIAKARSVVRVRSTRHPLLSPPSDVLAVQKPHSPTLLIRSMSSEAQSKAARLHGSGLLRSKGLIGGKWIDAYDGKTIEVRNPANGEVITDVPLMGQRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLVAHKDEIAQLITLEQGKPLKEAVGEINYGASFIEFFSEEAKRVYGDIISPTIADRRLFVLKQVGPALASGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIIFDDADVDVAVKGAIAAKFRNTGQTCVCANRILVQEGIYEKFANAFSKAVQNLQVGDGFGEGVVQGPLINEAAVQKVEKFLEDAITKGAKVLLGGKRHSLGMTFFEPTVITDVKSDMLLSREEVFGPVAPLLPFRTEDEAIALANGTNAGLAAYIFTNNIQRSWRVTEALEYGLVGINEGIISTEVAPFGGVKQSGLGREGSKYGMDEYLEVSWRAFCTTLEENGFSSLLLKLVPNPGPNLDPELVS 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42287797 42302261 + Lag0009783.1 Lac9g2296 621222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g2296 542 FunFam Aldehyde dehydrogenase, putative 482 507 - -
Lac9g2296 542 FunFam Succinate-semialdehyde dehydrogenase, mitochondrial 52 200 - -
Lac9g2296 542 Pfam Aldehyde dehydrogenase family 195 509 IPR015590 GO:0016491(InterPro)
Lac9g2296 542 Pfam Aldehyde dehydrogenase family 72 194 IPR015590 GO:0016491(InterPro)
Lac9g2296 542 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 286 293 IPR029510 GO:0016491(InterPro)
Lac9g2296 542 SUPERFAMILY ALDH-like 63 509 IPR016161 GO:0016491(InterPro)
Lac9g2296 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 293 515 IPR016163 GO:0016620(InterPro)
Lac9g2296 542 FunFam Succinate-semialdehyde dehydrogenase I 290 479 - -
Lac9g2296 542 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 314 325 IPR016160 GO:0016491(InterPro)
Lac9g2296 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 56 195 IPR016162 GO:0016491(InterPro)
Lac9g2296 542 CDD ALDH_F5_SSADH_GabD 83 507 - -
Lac9g2296 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 196 292 IPR016162 GO:0016491(InterPro)
Lac9g2296 542 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 508 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1384 Lac-Chr6:14939258 Lac9g2296 Lac-Chr9:42287797 5.70E-79 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g2296 K17761 - csv:101217352 839.336